MmuEX6091385 @ mm9
Exon Skipping
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116092232-116094051:-
Coord C1 exon
chr11:116093944-116094051
Coord A exon
chr11:116093708-116093803
Coord C2 exon
chr11:116092232-116092357
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCACCCTGCCGTGCTCCAGGTC
3' ss Score
8.65
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CACTTCAAGCAGCATGAGCTGCTGGCCCAGGAGCGGAGCATAAACCAGCTGGAAGATGACGCAGATCGCATGGTGGAGCTTGGGCACCCGGCCATTGGGCCCATCCAG
Seq A exon
GTCCACCAGGAGGCCCTCAAGATGGAGTGGCAGAATTTCCTAAACCTTTGCATCTGTCAGGAGAGCCAGCTGCAACGGGTGGAGGACTACCGTAGG
Seq C2 exon
TTCCAGGAAGAGGCGGACTCAGTCAGCCAGACCCTGGCAAAGCTCAGCTCCAACCTGGATACCAAGTACGGCTTTGGCACTGGGGACTCCTCCGGCTCCCCCACAGAGCTCCTGCTACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCATAAACCAGCTGGAA
R:
GAGGAGTCCCCAGTGCCAAAG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: