BtaEX6090631 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56262118-56263939:+
Coord C1 exon
chr19:56262118-56262225
Coord A exon
chr19:56262401-56262496
Coord C2 exon
chr19:56263814-56263939
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCCACACTGCTGCCCCCAGGCC
3' ss Score
6.58
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CACTTCAAGCAGCACGAGCTGCTGAGCCAGGAGCAGCGCGTGAACCAGCTGGAGGACGACGGGGAGCGCATGGTGGAGCTCGGGCATCCGGCCGTGGGGCCCATCCAG
Seq A exon
GCCCACCAGGAGGCCCTAAAGGTGGAGTGGCAGAACTTCCTGAACCTTTGCATCTGCCAGGAGAGCCAGCTGCAGCACGTGGAGGACTACCGCAGG
Seq C2 exon
TTCCAGGAAGAGGCGGATTCTGTCAGCCAGACCCTGGCAAAGCTCAACTCCAGCCTGGACAGCCAGTACAGCCCTGCCCCGGAGGGCCCACCTGGTGCTCTAATGGAGATGCTGCGGCAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=0.094 C2=0.738
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(33.3=100)
A:
PF0043516=Spectrin=PD(23.8=78.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCAGCTGGAGGACGAC
R:
TCCATTAGAGCACCAGGTGGG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]