GgaEX0027653 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:4551686-4556770:+
Coord C1 exon
chr18:4551686-4551847
Coord A exon
chr18:4552307-4552402
Coord C2 exon
chr18:4556632-4556770
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACACTCTGTGCCACCACAGGCT
3' ss Score
6.5
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AAAGCTTCCATCTGGCGAGGGCAGAGTCTGGGCAGCCTGTACCACCACCTGCAGGGCTGCACCAAGGAGCTGGGCTACCTGACGGAGCGGCAGACCTGCATCCTGAAGCAGGACTGGAGTGACCAGATGACAGACGTGCAGAGCGTGCGGCGGGAGTACGAG
Seq A exon
GCTCACCAGGAAGCCCTGAAGAATGAGTGGCAGAACTTCCTGAATCTCTGCATTTGCCAGGAGAGTCAACTGAAAAGCGTGGAGAACTACAAGAAG
Seq C2 exon
GGCTAAGGCTGCCCTGAACCTGGAGACTCAGATTGAGAACACAGACAAGATTGTCAGCACGTTTGAGGCCAAGCTGGCTCAGGATAGCATCATTCCTGCATCTCCCAATGCCCTGCAGGACCGAGCCAATGACCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108_MULTIEX1-2/9=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.298
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(13.2=18.5),PF0043516=Spectrin=PU(40.0=77.8)
A:
PF0043516=Spectrin=PD(23.8=78.1)
C2:
PF0043516=Spectrin=PU(37.9=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCTGCATCCTGAAGCAG
R:
TGGGAGATGCAGGAATGATGC
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]