MmuEX6091385 @ mm10
Exon Skipping
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116230918-116232737:-
Coord C1 exon
chr11:116232630-116232737
Coord A exon
chr11:116232394-116232489
Coord C2 exon
chr11:116230918-116231043
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCACCCTGCCGTGCTCCAGGTC
3' ss Score
8.65
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CACTTCAAGCAGCATGAGCTGCTGGCCCAGGAGCGGAGCATAAACCAGCTGGAAGATGACGCAGATCGCATGGTGGAGCTTGGGCACCCGGCCATTGGGCCCATCCAG
Seq A exon
GTCCACCAGGAGGCCCTCAAGATGGAGTGGCAGAATTTCCTAAACCTTTGCATCTGTCAGGAGAGCCAGCTGCAACGGGTGGAGGACTACCGTAGG
Seq C2 exon
TTCCAGGAAGAGGCGGACTCAGTCAGCCAGACCCTGGCAAAGCTCAGCTCCAACCTGGATACCAAGTACGGCTTTGGCACTGGGGACTCCTCCGGCTCCCCCACAGAGCTCCTGCTACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCATAAACCAGCTGGAA
R:
GAGGAGTCCCCAGTGCCAAAG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types