GgaEX0027653 @ galGal4
Exon Skipping
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4536162-4536845:+
Coord C1 exon
chr18:4536162-4536269
Coord A exon
chr18:4536381-4536476
Coord C2 exon
chr18:4536720-4536845
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACACTCTGTGCCACCACAGGCT
3' ss Score
6.5
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GACTTCAAGTCCAAAGAGCTGCTCAGCCAGGAGAAGTTCGTCAACAACCTCCAGGACGACGGGGACAGGATGATTGAGCTGAAGCATCCCGCCGTCAAACCCATCCAG
Seq A exon
GCTCACCAGGAAGCCCTGAAGAATGAGTGGCAGAACTTCCTGAATCTCTGCATTTGCCAGGAGAGTCAACTGAAAAGCGTGGAGAACTACAAGAAG
Seq C2 exon
TTCCAGGATGATGCTGAGACTGTGAGCCGCTCCCTGAAGAAGATGAGCTCCGATCTGGACACCAAATACACCAAGTTCAACAAAGACAGCCCTGGCGTGGTGTCAGATCTGCTGCTCCATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108-'8-13,'8-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.031 C2=0.048
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(33.3=100)
A:
PF0043516=Spectrin=PD(23.8=78.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCAGGAGAAGTTCGTCA
R:
GCCAGGGCTGTCTTTGTTGAA
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]