HsaEX1013710 @ hg38
Exon Skipping
Gene
ENSG00000131187 | F12
Description
coagulation factor XII [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr5:177405323-177405805:-
Coord C1 exon
chr5:177405735-177405805
Coord A exon
chr5:177405560-177405663
Coord C2 exon
chr5:177405323-177405433
Length
104 bp
Sequences
Splice sites
3' ss Seq
TACTCTCCTGGTATCACCAGACC
3' ss Score
5.86
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGTGCTACCACCCCCAACTTTGATCAGGACCAGCGATGGGGATACTGTTTGGAGCCCAAGAAAGTGAAAG
Seq A exon
ACCCCACACACCTGGGATTCTGGACCCAGCCCCTTCTCTCCCTCCACAATACCCTTTGGAAGTCCAGAGGGAGAGTTCTGGGAAGGAGTGGTCCCATTTTGCAG
Seq C2 exon
ACCACTGCAGCAAACACAGCCCCTGCCAGAAAGGAGGGACCTGTGTGAACATGCCAAGCGGCCCCCACTGTCTCTGTCCACAACACCTCACTGGAAACCACTGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131187-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.143 C2=0.283
Domain overlap (PFAM):
C1:
PF0004014=fn2=PD(38.1=64.0)
A:
NO
C2:
PF0000822=EGF=WD(100=84.2)
Main Inclusion Isoform:
ENST00000253496fB15170
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTACCACCCCCAACTTTG
R:
TTTCTGGCAGTGGTTTCCAGT
Band lengths:
179-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains