HsaEX1014308 @ hg38
Exon Skipping
Gene
ENSG00000099364 | FBXL19
Description
F-box and leucine rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr16:30923055-30925931:+
Coord C1 exon
chr16:30923055-30923152
Coord A exon
chr16:30924212-30924459
Coord C2 exon
chr16:30925731-30925931
Length
248 bp
Sequences
Splice sites
3' ss Seq
TGAGGGACTGAGCCTCCCAGAGC
3' ss Score
-4.18
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATCTTGCTTGTAGTCCTCTTTCCTTTTCACCTTTCCATTGTTCCTGACGAGTAGAAATGGCAGCGGGAAGGCAGCAGATGGACTGCGACTCCCGTCAG
Seq A exon
AGCAGGACCTCCCCCTGGAAGGGCCGCGCCGCAGCCCGTGGGAGGGCCTCGCCCCCGGCGCCCCCCATCTCCACTCGCCGCCGTCCCGGCCTCCGCCGGAGGGAGGGGCCGAGCGCCCTCGGGGGGCCGTGGACCCCGGCGTTCTGAGCGTTCCGCGCCCCGCGCCGCCCGGCCCCCCCGCCGCCGATGGCCGCCGACCCGCCGGGAGCTGCCGAGAAGGGAGAGATGGCTCCCGGGACACGTGTGAG
Seq C2 exon
CCCTCGGCGTTGCTGACGCCCCCAATGTCGTCGAGCAGCCGGGGGCCGGGGGCCGGAGCGCGCCGACGCCGAACCCGCTGCCGCCGCTGCCGGGCCTGTGTGCGAACTGAGTGCGGGGATTGCCACTTCTGCCGAGACATGAAGAAGTTCGGGGGGCCCGGGCGCATGAAGCAGTCGTGCCTGCTCCGGCAGTGCACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099364_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.191
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0200815=zf-CXXC=WD(100=79.7),PF0013017=C1_1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCTTGTAGTCCTCTTTCCT
R:
AGGCACGACTGCTTCATGC
Band lengths:
279-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains