HsaEX1014548 @ hg38
Exon Skipping
Gene
ENSG00000104760 | FGL1
Description
fibrinogen like 1 [Source:HGNC Symbol;Acc:HGNC:3695]
Coordinates
chr8:17885492-17895544:-
Coord C1 exon
chr8:17895447-17895544
Coord A exon
chr8:17887006-17887454
Coord C2 exon
chr8:17885492-17885571
Length
449 bp
Sequences
Splice sites
3' ss Seq
AATTTGGTGTTTCTCTTTAGACC
3' ss Score
7.84
5' ss Seq
AGGGTACGA
5' ss Score
7.38
Exon sequences
Seq C1 exon
AGAAATAATTACAAATTCCCAATGCAGTTACAGGATCCTGGGAAGCAGAGTGTCTGGATGGAACCTGAGCTGGGTCTCTGACTCACTTCTGACTTTAG
Seq A exon
ACCATTTGATGTGGACAGAGAATGAAATGTAAAATATGCCTCTCTTCAGAAAGAAGACTTACGTTGAAAGAAATAAGCAGAATAGTGTGCCTATACCTTTTATACCTCTCCCAGGTGCATGAAGGAGGCTTCCCAACTGGTGGGATTCTTTGGAGAGCGATCAGTCAAGGAAAAGCCTCCTTTGATGGAGAATCCTCCAATGTCAGTCTCTGAAGATCTTTTCGGTGAAGCTCTGCTGTTCCTCCAGCGAGGAATCCTATGTTCTTTGGCCTGGAAAGTGGTAGGAAGAGTGTAGAGCCGGTTGCCTGGCTGCAAGAGAAGAAGCCTGGGAAAGCCTCACCCTTTTTGAACAGGGTCTCTCTCCTCCCCTCCAGCACTTCTGCTGTCATGTCACCTGGAGCATCTCTGGGCAATCTTAATAGAAAGTAAATCTTCCATATTCTGAAAGG
Seq C2 exon
TTTTTTCAAGGGGGAACATGGCAAAGGTGTTCAGTTTCATCCTTGTTACCACCGCTCTGACAATGGGCAGGGAAATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104760_MULTIEX1-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains