HsaEX1015334 @ hg38
Exon Skipping
Gene
ENSG00000164900 | GBX1
Description
gastrulation brain homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4185]
Coordinates
chr7:151148589-151167548:-
Coord C1 exon
chr7:151167011-151167548
Coord A exon
chr7:151149920-151150021
Coord C2 exon
chr7:151148589-151149142
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCATATTCCTTCCAGTCC
3' ss Score
7.78
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
CGGCGGGGGCGGCGGCGGGGGCCCGGGCACTGCCTTCTCCATCGACTCCCTAATCGGGCCGCCGCCGCCGCGCTCCGGCCACTTGCTGTACACCGGCTACCCCATGTTCATGCCCTACCGGCCGCTCGTGCTGCCGCAGGCGCTGGCCCCTGCGCCGCTGCCCGCTGGCCTCCCGCCCCTCGCCCCGCTAGCCTCTTTCGCCGGCCGCCTTACCAACACCTTCTGCGCGGGGCTGGGTCAGGCTGTGCCCTCGATGGTGGCGCTGACCACCGCGCTGCCCAGCTTCGCGGAGCCGCCCGACGCTTTCTACGGGCCCCAGGAGCTCGCCGCCGCCGCTGCCGCCGCCGCCGCCACTGCCGCCCGAAACAACCCCGAGCCAGGCGGCCGACGCCCAGAGGGTGGGCTGGAAGCTGATGAGCTGCTGCCGGCCCGGGAGAAAGTGGCAGAGCCCCCACCACCTCCGCCTCCGCACTTCTCAGAGACTTTTCCAAGTCTGCCCG
Seq A exon
TCCTCCCAGCTGACATCAAGCTTAGGGGCCTCAGGATTCTGAACTTGAGCAGAAAACAGCTGTTTGTGCTGCTCAGGCATCCTTGGCTGGGGAAAGGGGAAG
Seq C2 exon
CAGAGGGGAAGGTGTACAGCTCAGATGAGGAGAAGCTGGAGGCATCAGCAGGAGACCCAGCAGGCAGCGAACAGGAGGAAGAGGGCTCAGGCGGTGACAGCGAGGATGACGGTTTCCTGGACAGTTCTGCAGGGGGCCCAGGGGCTCTTCTGGGACCTAAACCGAAGCTAAAGGGAAGCCTGGGGACTGGAGCTGAGGAGGGGGCACCGGTGACAGCAGGGGTCACAGCTCCTGGGGGGAAAAGCCGACGGCGCCGCACAGCATTTACCAGCGAGCAGCTTTTGGAATTGGAGAAGGAATTTCATTGCAAGAAATACCTGAGCTTGACAGAGCGCTCTCAGATCGCCCACGCCCTCAAGCTCAGTGAGGTGCAGGTCAAGATCTGGTTTCAGAATCGACGGGCCAAGTGGAAGCGCATCAAAGCTGGCAATGTGAGCAGCCGTTCTGGGGAGCCCGTAAGAAACCCCAAGATTGTTGTCCCCATACCTGTGCATGTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164900-'1-4,'1-3,2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=0.057 C2=0.666
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=30.8)
Main Inclusion Isoform:
ENST00000297537fB16196
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTACGGGCCCCAGGAG
R:
ATGCCTCCAGCTTCTCCTCAT
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains