HsaINT1014243 @ hg38
Intron Retention
Gene
ENSG00000164900 | GBX1
Description
gastrulation brain homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4185]
Coordinates
chr7:151148589-151167548:-
Coord C1 exon
chr7:151167011-151167548
Coord A exon
chr7:151149143-151167010
Coord C2 exon
chr7:151148589-151149142
Length
17868 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TGGCTTCTTGCTCCTCACAGCAG
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATGCAGCGGGCCGGAGGCGGTAGCGCCCCTGGGGGCAACGGCGGGGGCGGCGGCGGGGGCCCGGGCACTGCCTTCTCCATCGACTCCCTAATCGGGCCGCCGCCGCCGCGCTCCGGCCACTTGCTGTACACCGGCTACCCCATGTTCATGCCCTACCGGCCGCTCGTGCTGCCGCAGGCGCTGGCCCCTGCGCCGCTGCCCGCTGGCCTCCCGCCCCTCGCCCCGCTAGCCTCTTTCGCCGGCCGCCTTACCAACACCTTCTGCGCGGGGCTGGGTCAGGCTGTGCCCTCGATGGTGGCGCTGACCACCGCGCTGCCCAGCTTCGCGGAGCCGCCCGACGCTTTCTACGGGCCCCAGGAGCTCGCCGCCGCCGCTGCCGCCGCCGCCGCCACTGCCGCCCGAAACAACCCCGAGCCAGGCGGCCGACGCCCAGAGGGTGGGCTGGAAGCTGATGAGCTGCTGCCGGCCCGGGAGAAAGTGGCAGAGCCCCCACCACCTCCGCCTCCGCACTTCTCAGAGACTTTTCCAAGTCTGCCCG
Seq A exon
GTAAGTGCTAGGGCCGACCAGGGCTGGCGGGAGGCCGGTTCACCTGGAAATTCCAGACAGGAACCTGCTCGGAACCTCGGCACCTCGGCACCTGCCTGGAGCCTTGAAGTCCCAGACCTTTAGATCGCGCGCAGGTTCTGACTCCAATTCAGTTCCAAATACAGCCTCTTTAGATTCCAGAACCCCCGCCCTGCTCTGTCCCCATAGCCCTGAAGGCTAACCGAAGACTTTGCAGTGCTCCCTTCACATTAGTGCCTTTCCCTCAGCATCCTAGCCATCAAGACTTGGCCCTGTCTCCTTTTCAGAATTCCTTCATTTTTTTCCTCCTCTGTCAGGGGTAGACAAGCTACAAGGATGGGATTTCCGGGGGCACCAAGATGGGGGTATGTTGAAGCAGCTGTCAATTCAGCAATGGAGGGCACGTTCTGGCTTCTAAGGAGATCATACTGACCCTAAAGGCTCAAAGGATAGGAATAGGCTCTGTGGATGCAGGGGCAAAAAGAGTGTGTGTGTGTGTGTGTGTTGGGGGGGGGGGGTTGCGTCTCAAAGCCGTGACTTCTGAATTGGCAGATTCAGAGCTAAGCCTTGAAGAACTGAGTAGGGGGCCAAAGAGAACATTAGCTACAGGAGGCCTAGCACACGCTGGACAAGTGCTGACTAGGAGACCAAGAGAGAGGCTAAAGGCTGGGCTGAGTTGGGTGTGGCCCAAAGATCTAGGGTGCAGAACCCAGCTAAGATTCAGCTGACAGATAATTCAAGGGCCCTGGACCCTCCATGAATGGTGCCCTCTCCATAGAGGCAGGGTGTATTAAACTGAACCTTGTTTAGAGTCCATTCAATTAGAGCCCTCCTGACCTCTCTATTGGTCCTTAACTCCTAGAAGCCAGAAAAGCTTTCTTCTGGCTAGACAGATTCAGGTGTTCTGAGTTCCAAAGCTTATACAATTTGCTGGGCCCTATTTAAGAAAAATAGGCACCACTTGCAAGTGTGGGGACTCTGATGCTTCAACATCTTTAGTATCAGGATGGAACCGCTTCTGCTCAACCATTCATTGCATCCAGCTTAGAGGTGGAAATGACCCCAGTAGGCCTGGGAGCTGACTTGAACAGAGACAAGAAGGGAATGCAAGAGTGCTTTTGTCCTTTGCCAGCAGAGATAATTCTTGATTATCAGTTATGGGGCCCTTTCTGACATTGTCCAAAGGGTTAATCACTCTTTCAGACCCCAAAGGCTGCCATGGGGCCTGTCTTCCTATTCTTTTCTCCTTTCGCCCTGGCATTTTGCTTTTGGGGATTCAGCTGTTGTTTTCTTTTTTGTACCTGGTTGGATCAGGAAGACCCAGTAACTGAAGTCAGAATAGCATCTTCTAAGGGGGATCATAAGGAACAGATAGAGCAGCAACTGGAAGGTGGGAGAAAATGTCCACAAGATAAAAGGGCCCAGGGCGGGAGCCTGGAAGCCAGCAGGATGATCTTAAGAAAAAAAGATTAGTATGATTGTCAGAATAGGATGGTCCTAAGGCAGAAAAAAGAGTAAGACAGGCCATCAAAGAGATGACTTTGGAGGAGATAGGACCTGAAGGTGTAACCAGACACATATAGAAAGAGATGAGCTGAAGAGAGAGGATGGAGGGGGGATCCCTTGGTAGCGGGGACTTAGGGGCATATGCCCAAACTGTGGGACAACAAGCAATTTGTCCCACCCTTTCAGGTCTGCTCAGTTCTTATTTTGACCTATATGTATAATGGGAGCTCTTTTCTGGATCATATAGTATATTGGCTATAAAAACAGACATTGAGAAAGAGAGGAATAAGCAGAGAAAAAACAGAAGAGAAATACTGATGAAACAAGAATAGAGGAAAGGACCAGGGGATGAGTTGTATACTGGAATATACAAAGAGAACATGAAGAAGGAGAGGGTTCTCTGCTGGAAAAGGAACTCTGGACTGGACTAAATGAAAAGTGAACTGTATTACTGGACCACAAGTGTGAGTGAGTGTGTGTGTGTATGTGTGTGTGTGTTTGTGTGTGTGTGTGTAAGAGTTCTGTCATGAGAGGATTTGGGGGGAACTAAATAAAAATACTAGGGGAATAAGGAAAAGTTTCAACACTAGGAGTAATTTTCTTTAAAGAGTTTTTAATATTGAGAGTGAGGGGAAACTGGAATTTATATAAAATGACAGAGCTTCATCATCCGAGGAAAATGTTGAAAGCAAAAAAAAAAAAAAAAAAAAGAGGGAAATTTGTGTTGTTCTTGGAGTAAAGGCAAGGAATTTTTTTTGCCAAGAATAATGGAAAGGAGAACTTACAGAGGAAGAATTTTGAAAAAGTGCTGGAATAAAGGTAATCACTCATGCTGGGAGGAGATACATGTAAAGGGTTTATAGTGGGGAGGCTGGGACACAGTAGTAAGGAGGAGAGACTTCAGAAGAAACATTCAAAGAGCATGAGGAATGAGAGCTCCTATCTGTGACGGCTGCTTCTGTCACTCTCAGTAAACACGCTTCCAACTCTTCCTGGGCAAGCCATTCATATCCACCTTCCCAATCTTGAGTTTTTCCAGAAATCATTGAGAAAAGAAAATGCAATTCCAGAAATGAGAGACATAATATCAATTTGGGGACTGATGACACATGACCCAGGCTAAAACTGGTTGGAAAACAAATACTCTGTTTTGGGAATTGTATTAAAGTATTTGGAGTGAAATGACAGAGCTCTCTGCTGTGAATAATGGGATTGAAACCTCAACATTAGAAGAATTTGGAGAAATAATGCAATCTTTAAAATGACAGAGGAGAAATTGTTTTCCTTGTGTGAATGAGTGACATGGGTCTGAAATTATTATTAATTTACATTTGTTTAGTGTTTTACAACTGCTAACCCGTTTAAATAAAATCATAGTGTAGATAGGCCAATTTGGAGAATGATTAGTGATTTTCTTTGGGAATTACAGGGACTATTTTTTTTAATTTGTTGAGAGTTAAGACAGGTACCATTCTCTACTAGAACTGAGGAAGGATAAAAGGAACTTTGTTATGACTTGATTGCAGGAGTAGAAGCTATATTAGCAGGTGAAAAGAAATATGATATATAGAAGTAATTGGGTAGAAAGTTATTGAAAATGGTAGATTGAAAAGAATCACAAGTTTGGAATGTGGGAAGCAGTGGGGAAAATTGAGAGAATGTCTTTTAGTAAGAGTAATAAAGAGGAGAGAATTCCGAACTGTTAGGAAAGATTAAAGTATGACTCAATAGAAGAGCCCAAAGCAGTGCTGGCTAGTAGAGATATATGCAAGCCATATATGTCATTAAAAATTTTTTATTAGCCACATTAAAAAGATAAAAATAGGTAAAATTAATTTTAATTTTATTTAACTCAAGATGTCCAAAATATTATTTCAACATTAATCAATATTAACATTTTAATGATATAATTTTATATCTTCTTTTCATATTAAGTCTTCAAACTCCAGTGTTATTTTACACTTCCAGCACATCTCCATTTGGACTAGCCATGTTTCAGTTGGTCAGTAGCCACAGGTGAACAGTGGTGACCGTATTCAACATGACGGATCTAGAGAGTTTTAAGAACAGAGTTATGTGAAAGTGATGGAGGAAAAGGAGCTTTGAATTGGATAATGGGTCCTCAGTGTATTAGGAATAATGGAGAGAAGAGAGCAGGAAGCACTAAATGACAGGAGAGAACAGAATTCTGTCTTAGGTGGGATGGGCAGAGATTATCTCGTGTGTCTGACGGTTTGTGTGAGCTCTGGCTGAGAGTAATCAAAGCTAACTTGCTGTGTGCAAGATGTGGTGCAGATATGCATCACAGCAACAGTGGGTGAAAAGGACGCTATGTGCTGGGCAAATGATGAAAAGAGCCGTGAATGTGGAGAAATGTAGAAAGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGATGGGCAGATCACCTGAGATTGGGAGTTTCAGACTAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAATTAGCCGGGCTTAGTGCCGCATGCCTGTGGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGATGTTGCAGTGAGCCGAGATTGTGCCATTGCACTCCAGCCTGGGGGGCAACGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAAGGCAGAAGAAAACTTTGAGTTGGGGGTGTCTAGAGCAATTATTCACTCAGGGGAAAAAGAAGATTGGATTGCCTGAATGCAAAAGCTTAGGAAGTGAGGAATGGTAGCTACTCCATATATATTTGTTAGATGGATGACAAAAATGTAGTGAGAGATTGACGTGAAAACTAATACCAGTATTGGGCATAGTGAAGAAAACATTTGTAGTTTAAGGTTATATAGAAGATATGGGAATATGATGGGACAAACTTGAGACATGCTGTTGTAGTAAACATTGTTTTTTTAAACTAAGCTTAAAAAGATTTGCTAATTTCTGAATACAGATTGGCAATAATAATTGAAATCATGCAAGGAGACCGGGGAGACTTCCTAGGAGCCTCGTATTCAAGTGCTGATTACCGTAAGCTAAGCACCTGAATGTAGCTAGGGAACATTTGGATGACCATTAATTAATTTCTGAATAGGTATCCATTATGATTGTCAAGATATGATATTTACTTATGAGAGGAAAACAGAAAATGATAATATGACGTGGAATTAGAGAATTATGTTGTTAGAAACAAGAGGGAGATTTTTGGGGGAAGTGATGGAGATCCAGAGTATGTTTTCCTAGAACTTTTGAGCATACAGTCAGAGTGATTGCTGCATTGACATTTATAGAAAGGCAAATACTGCATTAACTTAATGTGATTGATGGAACATTTGTTTAGGAGTTGTGACACGTGGATTCAATTCTCACCTTTGTCACTCATTAGTTGTATAATTTTGACAAGTCACTTAGTTCAATTCAGGGAACATTTATTGTCTGTCTATTACTACAGACTTAGTATATTTGAGACACAGTGGGAGATTCAAAGTCACATGACTTCTCTAGGCTTTGGTTTCCTCAGCTGGGCCAAAAGTTTTGGTTCAGATGATTTTTAATGTTCCTTTCAATTCTCTAGGCCTCAGTGTTTAAAGTAGAGCTCTCAACCTGGACTCCACAGACCTTTCATCAGGGGATCTGTTAGCTATGGGTGGGAGAAAATTTATACCTTTATTTTTTATCACTTCAACTATGAATATAGGCCAAAAATCATAGTTGTTTCAGCGTGCATGATGTTTTTGTCAGTGAAAGAAATCACAGATAGTTTGATATACATTTACAGTCTTTGGAGGGACCTTGTTTAATGAATAAAGAAACATGATTATATCACAAGTTCTGTTTTAAACTATATTTTAATATACTTGACTTCAAATGTAATACTATGTATTTTATGTTGTATGTCTAAAAGCATTATTCTAGAAAGTGTTCATAGGCTTTACCAGACTGACAAAGGACTTAAGGGCACAAAAGGGTGAAGAACCCCCTGGATCAGAGATAGACCTCAGGAGTGACAACAGGAAAATTTTATTAGGAGGATTAGAATCAGAGGCTAAGATGCCCTGTGCCATAGTGAAAGTAACCCTTCAGGGGTTGGCAGAGAGAAAGAGTCTCTAAGGTGGCACATGTAAATATGGAGATATATATAATAGATGATTAGGAGGAGGATTCTTATACTTGGAGTGGCAGGCATGAGTAGACTATACTGGGAATAATGCAGAGAGGTAATATTTGGAATAATGGGGGAAATATTTTAATTGGAAAGAAGGAAGAACATGCATTGTGAGCAAAGTGCTTTGCATTGAGAGAAATGTTACAATAGGAAGCAAGAATTCTGCCTGGGAAGTAATAGGAAAAGAAAAGTAATGGGAAAAGAAACTGATTTGGAATTAGGAAATAGAAGAGAAGTAATTGAGTAGATGTATAAAAGAGAGAGAGATTTAAACAGGAATGATGAGAAGGAAAGAATTTGGTGGGAAGAAGGAGGGAATGGGGAAATGCCCTGTGCTGGGGTAGGAAAGAAACTTTGTGTCTGAACCAGTGAAAAGGACAGAGCTCTCTATGCAAGGTAGTGCTCATAACCGACAAAAGGCCTGGATTAGGAGTGTAGTAAAAAAGAGGCGGGAAATTTTTTTTGGAAGTCTGAGCTTGTTGGGAGAAAGTTATCAGCTTAGAGTACTGTGGATGAAATGCTAATGTGCTAGGACTAATTGAGAGAAAGGGTGATAGGGAGAAGAGATGCTTGCATTTGGTGCAATAGAGGAGTGGCCTACACAAGTTGAATTCAGGTGTAGTAGAAAGAGACAGGTGCTGCAAGCAGTGTCTTCACTGGCCATTATAGAGGGGAAAGCAATGATCCTTATGTGATGAAAAGAATCTGTATTAGAAGTAGAGGGGCTATAGGAACTCAGATGAGGGTTATAAGCAAAAGGCACTGTTCAAAATATGAGGACTGGGAGGAACAGGAAAATACTTCTGACTGGGGATAATGGGAGGCAGATGTCTTGACTGAATTATGGAGAAGATGATATTATAATAGAAGTAATGGAGAAAACAGAACTCTGTAGTGGGAACAGTGGGAAGAGAAGTAATGCAGAGGTGTCTCCATTGAGGGAAGGAGATGTAATTACCCTGAGTGTAAAGGCAAGAAGTGCTTTGTGCTGCAATTAATAACTATTCTATGAATTATGTGTGGACACTACAAGTACATAAACTGATTAGCCTAAGCAAAGGAAGTGTCTTAGCTTCCTCATCAGTAAAATTAGGGGCTTGAATTAGGTGATCTCTAAGATTCCTTCCAGCTCTACAATTCTGTTTTTATCTATAAGGATATCTTTATTAATGAATTATTTCTTTTAAAAAAGAAAGGCATCCTGAGCGAAGGGCCTGGGGAAACTATACTTTTCAGTGGTGTTGTAGTCATGGAGGAGGAGGAGGTAGCAAGGTAAGATGCATGCATCTTGAGGTGAGATCAGGGCTGGTCTTTACGGTGGAAAAGGCTTGTCTTCTGGGATTGGGGAGGGCATACCCAAGCTATGACTGTGTATAGCTGTCACATTAAATGAGAGAGAGAAACATTTGATAAAGACGGTAGATTTTGTATAGGCCAAATAGATTGGGGATCAGTTGGGACCAACTTTAACTGGCGAGGAAGGAAGCACTGGAAAAGAAGAGAAGTTGTGTTGTAAAATTGGTTCCTGGCCTTCTATATTGTTTCTGTATCTGGAACAATATTTATGATAGGCTGACATTAGAATTCAGTCTCGTCCTAGTATGGTGGCTCATACCTGTAATCTCAGCTCTTTCGGAGGCCGAGGTGGATCACTTGAGTCCATGAGTTTGAGATCAGCCTGGTATAACATAGTGAGACCTTGTCTCTACCAAAAGAAATTTGCCAGGTATGGTGGTGTGTATCTCTAGTCCCAGCTACTCAGAAGGCTGAGGTAGGAGGATTGCTGGAGTCTGAGAGGTTGAGGCTTGAGGCTGCAGTGAGATTTGATTGCACTACTGCACTCCAGCCTGCACAACAGAGCAAGACCTTGTCTCAAAAAACAACAACAAAAATTCAGTCTCTGCCTGGGTGCAGTGGCTCATGGCTGTAATCCCAGCACTTTGGGAGGCTGAGGCTAGGAGTTCGAGACCAGCCTGGGCAACATGGCAAAATCCCGTCTCTACAAAAAATACAGAAAATTAGCTAGCAGTGGTGGCGCACACCTGTGGTCCCAGCTACACTGGAGGCTGAGGTAAGAGGATCCCTTGAGCCTGGGAGGTGGAGGCTGCACTGAGCCAAGATCATGCCACTACACTCCAGCCTGGGTAACGGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAATTCAGACACTTTTTTTACATTAAATGTTAACAAAGAGATGAGGTGTAGTGCAAAGGAGCAAGCATGGGCTTTGGTCAGGAAAGCTGGGTACAGATGTTGGTGGCGCACTTTCTTTGTGATCTATAGGAAGTACTCACCTGTACAGTCTGTTTCCTCACCAGCAAAATAAGGACAGTAATATTTACCTCACAGGGTTAAGGATTAAATGCACAGATATTTGTGCAGCATCCTGAAAGTAATAGGTGCTCAAGAATTTATCCTTATTGTCCTTTTCTTGGAAATATGTGAGGCGCTTTCCTGGGAATTAAGTTGGGAAAGATCTTGTTACTAGGAATGGTGTAGGATAGGTGACACTCTATGTATTGAAAAGGACAAATATTTCTGGGAGTGATGATAGAGTAGTTCTGTGTTCTGAGAACTGATTATTCGGGGACTGCCAGGAAAGAACATTGTACTGAATCTAATTAGGGGTAGATTTCACATGTGTCTTTGGCTCTTTCTCCCTCTTTTCGGTTTCCCTGTCTCACATTTTGGTGTCCTCTGTAAATCCCAAGCCTGCTGAAAACCCCTTTACTGTGCCTCACTAGGGCCTGTTCTCCCTTTCTCTCCATTAAAAAAAAAACAAAAACAAAAACAAAAAAACTCTTCTTGTTTCTTTATCAAAAAATTTCTGTTCCCTCATATGTTTCATTTCAATTTGATGTTAAAATCAAAGCCACTGGATTAAACTAATTCACACTCAGGTGGGTTGAGATTTTTTAAAGTCCAGATGAATTTCAAACTGGTGGAATCTTATGTGGTATTACTATGAATAATTTTAGGTAATATGGAAACATTAGCGTGGATGGGAGAGTTGTGGGAGTGAGGTGGAGAGGTTTACTTTCCCTGGAGTCATGTGACCATTGTCTCTTCTGGTTACAGCATCGTACTTAGTCAGAACTCTTCGGGTTGGTAGTGATAGTGGCTCAGCTCTCAGCTAAAACGGGGATTTATTGCTTCTTGTAACTGCAAAATACCTGAGTGGATTCAGAAATGTAAGTAGTGTTGTGAGGTCTTTCTTTTTTGCTCCCAACCTGGCTCCTCTCTCTGTCTTCACCTCATTCTCTCCTTAAGACAGCTTTCTTCATTTAGCTAGAGGTAAGAGAAGGCACAAGCACATGCAGTTCTAAATTTTTATAATTTTATAATCCCAGGTTATAGGACCTGAGTGGATTCTAGTGTAAATAAAACCCTGGGATGACTAATTCGCTAGCTTGAATCATGACTCCAGGGAGATAGCATATTACAATTGGTCAGAACCAAGTCACATGCCCACCTTTAATCAGGAAGGTAGAGAAATGCTGTTGACAGTCCCACCAAGTAGTGGGTAGTGTAGCGGGGAAGCAGTACCTAAAGGAAGCGGGTACTGCTACTGAGCAAAAGGGGGAAGGTATGCTGGGCAGACAAAAACAACCCAAAACGGATGTCTACCTCAACCAGAAAGAAGGAAAAGAATGGGCCTTCAGCTCCCTTTCAGTATTAGGAAGAAATACTGAAAGGAAATCCTTTGTTTCCCCACTGGCTAGCTAAATAGTGATAAAGAGATCCTGGCAGTGAAGGTCTGAAGAGAGTTCTGTAATGAGGAAGGCAGAGAGAGATGAAGATAGTACAAAAATTTCCATCGCTCAGTGAGGCTTTCTGTTTGCTCTGATACCTATACGAGAAAGAGCTCTATGAGGAATGAGGGAGAAAGTTGTAAACTAGAAGCTAGAGAACATTGAGTGTTTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCCCTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACTATGTTGGCCAGGCTGGTCTTAAATTCCTGACCTCCTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGACGTTATTATTTTCAAAGTTAGAAAATACACTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCTGGGCTGGAGTACAGTTGTGCGATCTCTGCTCACTGCAACCTCTGACTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGCGCGCACCGCCATGCCTGGCTAATTTTTGTAGTTTTAGTAGAAACAGGGTTTTACCATGTTGGCAAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCGTGCCCAGCCAAAAATGCATTTTTAAATAAAAGAAGCACTGACTGGTAAGATTACATCATACAAACCAATAAGGACAAAAGAACGGGAGAAAGATTTGGTGGGAATTTTGTCTCAGGAATGACAGGAAAAGTAGCTTGTTAAAGGACAGGTGAAGTTTGGTGAGTGAAACGTCTCTGATGACAATTTTAAGAATCTTCTCTGAGAATGTTAAGGGAAGATATTAATGATTAGGCTAGGACTCTGTGGTAGTAAGTGAAAGGGATGAGATCTTTTTCTTTCTCTCTCTTTTTTTTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTGTCGCCCAAACTGGAGTGCAGTGGTGTGACCTCAGCTTACTGCAACCTCCGCTCTCAAGTTCAAGTGACTCTCCCACCTCAGCCTCCCGAGTAGTTGGGATTACAGGTGTAAGCCAATGTGCCCAGCTAATTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTGGCCAGGCTGGTCTCCAACTCCTGGCCTCAAGTGATCTGCCCGCCTTGGCTTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACTGAGTCTGACTAAAAGGGGTGAGATCTAAACTTGGATTTGATAAGAAGGTTATTTATCTAATGAGACATCTGGGGAGAGGGCTTTTACAAGTGGGAGAGGAGGAGAAAATAGTTTACTGGAAAGAATGAAAACAGCGTTAACTGCAGCTTTAGGAGACTTGACATCCTGTCCCTCTCTGATGCTAGACCTGACACTCTGTCCCTCTCTGCGTGACTTAGGAAATCATTTAATCTGTCTGAAACTCCATTTTTTCACCAGAAAATAAGGTTACTACCTCTCCTATTACTACTAATAATAGATCTGCTCTACGTCAGTCAACTGCTTGAAGATAAGATAGTAAATGTGGAAAATGTTTTGAAAAGTTAAAGATCATACAAGAGTGCTCTTGGAAATGGCAATGTTAGTATGCCCTGAAAGGAGGTCTGAGCTTAAAATGGTGGGAAATTGCCCTGAACTTGTCATGAAGCTGGGAGGGGTTCTGGATGACAGTGATGTAAAGAAAATTTTTTTGACTTGGAGTAAAGAATGCTAAAGAGTCATAGGAAGAGTGCAGAGAGAGAGAGAGAGAAAATGAAAATGAATGTTTCCAATTATACCTAAAATTATAGGCAGGAGTAGGAGCATAATGGAAGCATGAAATTCATGAGAATGAGTGAAAAATAAACTGAGAGTGAACTGGCTGTTTTAAACAATCGGAGAAAGTACTGTTTTTGAAAAGAACAGAGAAATAATTCTGTATTGGGCATGATGAAATGAGGATTTAGAAGTGGGAGTGATGGCAAATATGTCTCTTTTTTGAGGAATGACCTGTGTTTCTTCCCACCTTTTGACCCCACCCAAACTGGAACTGGATTCAGGGAGATGAGTAGTTGGCCTGTGAAAATCAGGAAGAGATTCATTGTCCTAAGATGGGCGGACCAGGAGAGAACCTAACCTTTCCTAAGAGTGGTTGGGGCAAGTGTTAGGATAGTTGTTTTTGAAGTAGAGAGAAGATAAGTCAGAACTGAGGGGCTTCTCTTCTATGAATACTCAAGATAATTGATTTCCTACGGTGATAACAGCAGGAGCTGCAGTAATGGGGTGAATGAGGGACAGCACAGGGGCTAGATGAATTCCTGTAGTTGGGAGCATAAAGTTGTCCTCCACTCCCTCTGGCTTTTCCTCCTCCTCCTCGGTGCCTCTAGCGCAGGCCTCCCTGCCTAGATGGAGTGAGTCTAGGGCATTGTGTTCTTTCTGCTGGAGAACACCTACTATGGATTCTTTGGCCCTTGATTTCTTCCCTAGCCCGAACTGACCCATTACCGAGATGGCCTTCTTTCTGACTCTGGAGCTGCTCCCCTTCCTCTTAGAAGGAAGGCCCCATGCAAGCACGTCTCCTGGAGCATGAGTGCTGTTCTCTGGAATGAGATTAATGCCCTTGACGTGAACTCTACAAGTAATCAAGGTTCAAACCTTGTGATTTCTAGTTTTTAGGATAATAGCATCCACCAGGAGAATTCACATGAACTCTGTTTCCTAATGACCAGTCTGTCCTACCATCACTTCCCCTGACCAGAGGCCAAACTGTTTTTCACAGATTAGACTCAACCATAGGGAACAAGCTGGAAACTCAATATAGTCTTCTTATTACCAATAATATCATCCTCATCATAAAGGACAGAACCTTTCTGTCTGTTTGGCCTACTTACCTAGCACAACAAAATAGTTTAGATTTTTAAAATTTTCATTTTGCTGAAGTATTCTCATCAGAATCATTATTTCATTATTTTCCATAGGAAATTTTTTTCATGCAAACCAACAACTTGCAATTTTCCATGTAACATTTTTAATTCTTATTTATTTATCGTTTTTTGTTCATACCAACCAATTATACTGTCTGCAATTGGAAATTTACTTTTTTTTTTCGAGACAGAGACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGCTCTCTGCTCACTGCAATCCTGCCTCAGCCTCAAAAGTAGCTGGAATCACAGGCGCACGCCAACACCCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTGGTGAACTCCTGACCTCAGGTGATCCACCCACCTCAGTCTCCCAAAGTGCTGGGATTACAGGCATGAACCACCATGCCCAGCCAGAAATTTACTTTTATGAACATTGTATCTACCAAGTCCAGTTATTCTAAATCAAATTTTGCAAATAGAAATTTTATCAACAAGATTTGCTTCTTGCCAGCCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCGAGGTGGGAGGTTTGCTTGAGTCCAGAAGTTTGAGACCAGCCTGGGCAACATAGTAGGACCCCAACACTGCAAAAAAGTAAAAAAAATAAAAATAAAAAAGTTAGCCAGCCATGGTGGTGTGCGCCTATGGCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCACTTGAGACCAGGAGTTCAAGGCTGCGGTGAGCTATGATTACTCTACTGCATTCCAGTCTGGGTGACAGAGCGAGCGCCTGTCTCAGGAAAAAAAAAAAAAGATTTGCTTCTTTCAATTTTTAGTCAATAGCAAATTTTTATGTGCAATTTTTATTTTTTACTATTAATATTCATTATAAATTGGATAAAAGGAAATATTTTTATTTCTTAGCTAATTCCAGAGAAAATAGTTAGCTGTTTTGAAATTTCCACATTGTAAAGGATTGCACTACTGTTTTGCTCATTCTCTTTCTCTGCCTGTGTCTTTGGCTACTGCAGTCTACAGTGCTCCTTCTCTTGGGGCAGCAGAGAGCAAATGGCAGGGCCAAAATGTTTTGCTTTGCTTCAAATGTATCAGTATTCTGGGGGGAAAGGTAGATGAGGCATTTCTTAAAAAGTACCTTTTGCTTTCTTTCCCCTGATTTTTCCCATATTTTCTCTCTCCCTTCTCTAGACTTTTCAGCCCTTTTATTTTATCTGACTCATCATTTAATTTTTCTGCTATTTCTCTACCCCACTTCTTTCCTTCCCCAGTCTTCTTTCCACCTGCCTTGGCCTTTCCTTCTCTCTCCCACTCCTTGTCGGTCTTCCTCATTGTCCCAGACTCTCCTCTGAGGCATGTGGCTGTATTTTCTCCTCTCGTTGCTTTCTTCTATTGTCCCACCCCATTTCATTTCAAGAGTTGCTTATCAGAGTCTTCAATGTCATGATTATAAAGGCTCAGAGAGAAACTCTTGCCCCTGCCGCTCAGCATCCCACTGGGATCAAGTAACCAAGAGAGGTTGTGAACCTGTGCTCCTTGTATGGCTTTAAAAGCAGCACTGAGGGTGGCCGGCTCATGTGGGCTTCATTTTATGGATCTGTCTGAAGACAGAGGGATGGATGATACGATCTCAGGAGGGCCCTGCCAGATCGGGAACCTGGGAGCCTCATCTCAATCATCATCAATTTAGATTTATTGGACACCCCCTGGGTGCTTGGAGTTGTACTAACTGATTTTATCCTTCAAGCCTCGAAGTCTAGTTTCTGCCTTTTTAGCACTGTTTAACATATTGTAATATTGGGCTGAGTTTGTACAAGCCTTTGTTATTCTTTTTGTTATTATTTACTACAAACTATGTTTTAAAAAATTAAAATAGAGGATTTACTAATGGTATTAGGATTGTCCTTAATTTCTTTAAGCATCCTATAGATTTTTAAGATCCTATAGATTCCTACTGCATATGAATTCCTCTCCAGCTAATGTGAGATCTGAGGGCATTCTGAAAAGTGGGAAGGATAACATTCATAGGGAGATGTCTTATGCACTGGAGCTGGGCGGGGTGGGGTTGTGGGGAATATCGTCGGAGAGGCTTAGGAAAGGAAAGGACAGGGAGGGAAAGAAAGACGGGGAGCACATGCATGAGCATTTGGAAATCGTTTCTTTTATTTAGTCAACAGATGCTTATTGAGTGTCTACTCTGTATTGAGTGTCAGGTCATTTTCAAGACACTGAAGATATTGCAGTGAATGAGAAATATTCAGAATACCTACTTTCACGAAGCTATAGTCTATTAGGAAGAGACAGCCAGTAAAATAAATGAATAAAATTGGTAAAATGGACCAAAGTAACAAATAAATCGGAGAAAGGACATAGAGAGTATCAGAGGGTTTAAATTTTAAAAGGATGACCAGGGGAGGTGTCACTGATAAAGACCTGAAAGAGGTAGGGAATAAGCTAGTGCAAGATCTAGGTGAAGAGTAGTGTATTCCAGACAGAAAGAGGAATCATGGGCCAGGTGGAGTGTGGAGGACAGAAGCTGGGAAACCAGTTAGAAGATGACAGTGAACCAGGTCAGAGATAATTGTGATGTGGACTAGTTGGAAGCGGGAGATAGGGAGAAAGGATTGGGCTCTGGGGGTATTTTAAAGGCAGCAGCACTAGCAGGGCTTGTAGATGGACTGGATGTGGGTTGTGAGAGAGAGGAGTAAAAAGATGGCATCGAGGTTAGGTTTGAACACACAGAGGATGCAGTTGCCATTAACTGAGATGGGGATGATGTGGATAAAGATGAGAAAGAGCTGGTTTGGGGGAATGATCTGATTGGAGTTCAATTTGGGGCATGTTAAGTTTGAGTTCTGTGGAAGTGGAAAATAATGGGAGAAGAGACCTTAATGAAATGAAGGAGGAAACCAAGGATGTGAATCTTAGAGAAAACAACATAGATTTGGCTAGGGGTGAGATAGAGGGGAAAGAACAGGCTGATGGGAGACATTATGAGGGGCGAATTAGCTACAGACAGGATACAGTACTTACCCAGATGGGTCTTGATGCTGGGCGCCAGTGAAGCCTGAGCAAACTAGTAAAGAAGAACAAAAGCCATTGGCTGGTGAAAAGCAATGTACAGGAGTGGCATGGGAAGACTGGGGGAGCCCAAACTGGGGCATGCCGCATGGACTTTGAGAAGGTTAGAAGAAACAGGAAGCACTCCAGAAAGAAAAGGAGAGGGATGAAAACACCTTCGAGGTATGAAGTTGATTGGGATGTAGATGGGTGATGTGGAAAAAGGTTGAGAGTTCTGGCCACTAAGGAAAATGTCAGCTGGGCGCAGTGGCTCACACCTGTAATCCTGGCACTTTGGGAGGCCAGGGCTAGAGGATTGTATGAACCCAGAAGCTCAAGGCCAGCCTGGGCAACATAGTGAGATCCTGTCTCTACAAAAAAATAAACAGAATTAACCAGGCATGGTGTGTGCCTGTGGTCACAGCTACTTGGGAGGCTGAGGGTGGAGGATCCCTTGAGCCTGGAAGGTCAAGGCTGCAGTGGGCCAAGACTGTGCACTATACTCCAGCCTTGCTGACAGAGTGAGAGTCTCACTCTGTCTCAAAAGAAAGAAAGATAGGAAAGATAGGAAAAGAAAATGTCAATGTGGCTGTTGAGGAAAAAGACCAGGTGTAGACTGCACCTGTGAGGGGGAAGGGAACTTGGCAGGGGGTGGGGCGGGGTGTGCTGAAGGAGAACACCAGGAAGCTCTGACTGCCAGGAGATGTTCTATCTGTGAACACACACACCCTCTTTCTCTAATAAAGCCTTTCCCCGTGCCCTGAATTTAGTTTACTTGGAGTTGTATTCTCAACCTCTGAGTCTGCTTATCTCAGGCATATCTGATATGTGGCCGATACAGGGAGATGCATTCCTACATATAGGTATGCAGGCCTCCTGCCTTTGCACAGTGGACACTTCTGGAAAGGAGCTGACTATTCAGCTTACAGATTATCCATTTTCTCTTGTTCTCCTGCCTATTGATTGTCTTTTGACTTGTTTCACTGCTTTTTGGTCCTTTGAGTAGAAAACGGAGTTTGTAAAACTCACTGAAAACATGTGTAATGCATTATTTGCAGTTCTGATATAAACATCATTGGATACAAAGATTAAAACCAATGGTTGAATTAAGTTTTAGAATTGTGTGGATTAAAATGTTTATATGCTTGTGATTACAAATAATCAGTATTCTACTGAATCAAAATTTCTTTTTTACCCTTTCCTTCTCTTCATTTGTCCCTGTTGCACTTTTCCCTCTTCCTCCTCCTCCTCCCATATTCCTTCCAGTCCTCCCAGCTGACATCAAGCTTAGGGGCCTCAGGATTCTGAACTTGAGCAGAAAACAGCTGTTTGTGCTGCTCAGGCATCCTTGGCTGGGGAAAGGGGAAGGTGGGAAAGAGATGGTTTCATTTTAAGGTCAAGGGTAAGGATTGAAAGGGGATCAGGAGGCCTAAGTAACTGGGAGAAAAAATCTGGCCACACTCAAGGTGCTGCATGGCTGGGAGCCATGGAAATGAGGTTCAGGGACTGCAGATCTAGGGAAGAGGGAGAGGAGGAGACAGAACAGAGGCCATGAGACAGCTCTCGTCAGCTGGGCCAGATGAGGACTCCTAGGAGAAGTGCAAAGGCTGAGCCCTTCTCTCCCCGTCTGTCCTGCCAAGGTCAGTTCTTCTGCATTGCTTCACTCCTCCCCCCAGTGGCTCCAGAAGGATCCCAAGCCGGGTCCCATACTGCTTCATTCTGGCACCTGAGGCTGCGAGGCCTGGCTCTGGAGGGGTGGTATATCACTGCGATGCTGGGCCCTTGGTCTCTAGGTTCCGAGAAAGCTGGGGAGGTGGTGGGTGCGAATGAGATGGGGGTGGTGGGGAAGTTGAGGGGTCATTGTCCACACACTTATTGCCTCCCACACTTTTCCGTAGTGAAATCTGTGCTGGTTAATACCTTTCTTCCCATTTCTTTGTTTTCCCTAAACCTCTTCCCATTCCATATCCTGGACATACCATCCTTCTGCCTCCTGTCCCTCCCCATCTTCTCCTCTCCATGGCTCTCTTTTTTCCTGCTCTTGTCTCCCAACCCCCCATTTCTGGCCATGGTTCCATGGGCCTCCTCCAAACTCTCTTTTTCTTGCTTCTCCCTCCCCATCCATTGGCTTCTTGCTCCTCACAG
Seq C2 exon
CAGAGGGGAAGGTGTACAGCTCAGATGAGGAGAAGCTGGAGGCATCAGCAGGAGACCCAGCAGGCAGCGAACAGGAGGAAGAGGGCTCAGGCGGTGACAGCGAGGATGACGGTTTCCTGGACAGTTCTGCAGGGGGCCCAGGGGCTCTTCTGGGACCTAAACCGAAGCTAAAGGGAAGCCTGGGGACTGGAGCTGAGGAGGGGGCACCGGTGACAGCAGGGGTCACAGCTCCTGGGGGGAAAAGCCGACGGCGCCGCACAGCATTTACCAGCGAGCAGCTTTTGGAATTGGAGAAGGAATTTCATTGCAAGAAATACCTGAGCTTGACAGAGCGCTCTCAGATCGCCCACGCCCTCAAGCTCAGTGAGGTGCAGGTCAAGATCTGGTTTCAGAATCGACGGGCCAAGTGGAAGCGCATCAAAGCTGGCAATGTGAGCAGCCGTTCTGGGGAGCCCGTAAGAAACCCCAAGATTGTTGTCCCCATACCTGTGCATGTCAACAGGTTTGCTGTGCGGAGCCAGCACCAACAAATGGAGCAGGGGGCCCGGCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164900:ENST00000297537:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=NA C2=0.666
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=30.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains