GgaINT1014480 @ galGal4
Intron Retention
Gene
ENSGALG00000023647 | Gbx-1
Description
Transcription factor Gbx-1 [Source:UniProtKB/TrEMBL;Acc:Q9DEB1]
Coordinates
chr2:173804-179883:+
Coord C1 exon
chr2:173804-174313
Coord A exon
chr2:174314-179110
Coord C2 exon
chr2:179111-179883
Length
4797 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGACGCTGTGTGCCCCGCAGACG
3' ss Score
10.72
Exon sequences
Seq C1 exon
CGAGCTCGCCGGAAAGTTGGTGCCGGCTGAGCCGGCGGCGCCCGCTCGCCATGCAGAGACCCAGCGGCCAGGGGACCGCCTTTTCCATCGACTCGCTCATCGGGACGCCGCCGCCGCGCTCCGGGCACCTGCTGTACACCGGGTACCCCATGTTCATGCCGTACCGGCCGCTGGTGCTGCCGCAGGCGCTGTCCCACGCGCCGCTGCAGTCGGGGCTGCCGCCGCTCGCACCGCTGGCCTCTTTCGCCGGCCGCCTCACCAACACGTTCTGCGCCAGCCTGGGCCAGGCCGTGCCCTCCATGGTGGCCCTCACCACGGCGCTGCCCAGCTTCTCCGAGCCCCCCGACGGCTTCTACCCACCGCAGGAGCTGCCCCCGCCGCGCGCCACCCCCGACGCCGGCTGCCGACGGGGCGCCGAGGGCCTGGAGCCGGAGGAGCTGCCCCCGGGGCGCGACAAAGGGCCGCCCGAGCCGCCGCTGCACTTCCCGGACCCCTTCCCAGGCCTGGCAG
Seq A exon
GTAGGAGACGTGACGCCGGTCCGGGAGCCCCGAAGAGCCTCGCGGTGGGCAGCGCCGCCCGCGCGCCCCTTTCCCGGGCTCCGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGCCCGCAACTTTGGTGGCTCGGAGACAAACTCCGCTCTCCGCTTCCGGGCCGCGCGGAGCGCGAACCGCCGCAGCCGCCGCTCGGGGCCGCCGTGCGGGGCGGCCCGGTGGGACGGGGTGGCGCGGAGCTCTCCGAGGTGCTGCCGTCCCGGCCGGCGGAGGCGGAAGAGCCGCGGGGCGGATCGGTCCCGTCCGGGTGTCGGTCGGTGCTCTCTGCAGGTCTGCGCTGTGTACCCGCACGGTGCCGCGCACCGCGGGACGGGGGCTCCGACTGAGCCCTCGCTCTCCCGCAGTTCGGCCCGCTCCGGGTCCCGCTTCCATCCTGGTCCCTTTTCCCTCCCGGTCCCGCGCCACCGAGGCGACGCACGGGGCAGCCCCGTGGCCAACGGCGGCCCCGCGCCGCCCGCAGCCTCACTCACCTTCGCTCCGGTTCGCCGCGCCCGCGGCCCCGGCTTTGCCCGACAGAGCGGGCAGGCGGCGGCTTCTCTCCGAGTTCCCGCTCGGTTCTGCCCTGAGGCTGCTCCCACTGCGGCCCTCGCCTTTTTGAACCTCCCCGGGTGTGCACATACCCGCCCGGTGACTTGTTGCGCTGTTCCTCTGCCAGCTTCAGCTCTTGCTTTCTTCCACCTCTGCTCCCGCAGTACGGGGATGGAGGCTTCTCTGCAGCGCGGCTGACACAAACCGAACGCTGTCTTTCTCTGGCACGGCCTGTCCTGAGCTCTGCCTCCTCCCGACAGCTCCGAGATCCACCTTTGTCTCATAGTCTTCCTAGGGTGGATCCGTGCTGAGCAGCCTCTGCAGCTTCTTGCAGGGCTTGGCTGTGCTCTGTCCTCCCGTTACACTCCCGGGTAAGCCCGGCTGCTCTCCTTGCCCTGACTTGTTCCTTGCTCAGAAGACTGTTGCACACATGCAGGTATCCCTTGAAACCACTCTCTGGTTTAGGACAACTGTGGCGTTTTGCCTCTCCTTTCTTTGTTACTGAGCTTTGGTGATCCCTACGCACTCTGTGCTGAGTCAAACACCCGCAGCAGTCTCACTTTTGTTTTGAAAGTCTCCTCAGGAACAGAACTGCTGTGGCCAAAGCCTGCATCTGTGTGATCACATCCTCCCACTCTATAGGGAGACGAGCAGCACTGTGCTTCCTCTCCCTCTGTGGCTCCTCTGTACCTGAGCTCAACGTGTTGTCCTCCTGAGGGACTCAGATGAGCTGTTCTGAAAATTGGACATTTCTGATATTGAGAAATTGTATCTGAGGCTCACTCTGTTGTGACTGTTCTGATGATGGAAGGAAACGTGTCTTACTACTGCTGTTCACTCACTGCTGCCTGTTAGCAGTTCTCAGCACTGTTCCTGCTCTGAAGTCATGAAGGATGCTTCCCATTCTGCCCATGTGGAGCCACGGTCAGGACCACTGGCCACGATCTGCCCAGGTCCGAGAGGATTCCTGTCTGTAATTTTTCTCTTAACTGTACCTGTCAGGGTCCACAGAGATGGACAGCAGGGCTTGTTTTACCAACCAGGTCATATGGAAACCGTGATGATTGCTGTGGGCTTTTTCCACAACCAAGAAATTCAGGGAAATACGACTCCCGGCAGTAATGCAGTTTTCTGTAGAGTCCTGCCTGTGGCCCCGGCCAAAACCAACGGTCCAGGGAGGAGTAAGAGAGCATGATCCAATGCAGTACTTCCTACAGCAGCCTCCTAACACTGCACCTCAGCCAGCTGTCGTTTCTGTGTGTGTATCAACCTTTGACCAATTCCTTTTCTATGTTCTTATTTTGTCTTCTCTGGAGTTCACCAAAAGGGAGACAAACTTGGTGTTATCTACAAGGTGTTCTGCAGATCTCTTATCTGTAGAAGAACCATGCTCATGGCCTCCTTTTGTCTGTCTACTGACATTGAGTGAATTAGACTCTAAAGAGATGGTTTTTGTCCCCAGCTTCCATTAGTGCTGGGGACCATTGCTCCATTTTAGGACCGCTCCCTACACCTACACCTAGTGTGTTTCAGGCTTCCACTTGTGGTCACACTTCTTGAGAGGGGAGAGGCATGTAGGGAAAGTGGTGGAAGGAAGCAGTGAAGCCTGGAGGCTGCTTTGTTGCTGCAGCTGCAAGGAGGAGTGTGACTCCCAGGAAATGGCACTCAGTGCACCCTTTAACATCTCTCTTGAGAGTGTATTTCTTCCTGAGCTGCACAGATCTCCACCAACATCCAACCTCTCTTGGGCCCATGCAGTAAATCCACGTTCAGTTAGGTCTGAGAATAATTAGGGTGGAGAAGTATTGTGTTGTTCCCTATAAATGAGCGTGACAAGGAGCTCTTGAGTGTTTAGCAGCACAGAGCTCTTCTGGTTCTCACAGCACCCATTCTTGAGCCAGGTCCTCCTGACCCTGCTCAAATCACTTTGCCACCTGTAACGCTCTCCAATCACTCCTCACCATGCATATCAAATCCATAATGAGGAAAATGACAAGCTGGGATTTTATGATGAGCGAAGAGATGGACCAATCCGATTCTGGGTCTGCTGCCTTGTTGGTTTTTTCAGTCACAGCACTTTGCTTTGTGCCAACTTCACTACCTGTTTGAGGGCCTCAGAAAGCCTCAGCACATCTCCCACCAAAGGAGTGGGCTCCACTGCCTCCATACTTCCTCACTGAGAACACACCAGGTGGTAAATGGACCAACACACCCATTTTCTTTGTAAAAACATCTGATTTACAGTCCACCATGTAGTCTGAGTTCCTTCCTGCAAGCTCAGCCCTTTTATAAGATACAAACCAATTGGTGACTTTAAAACCTGTGGTCTGGCTGTGCATTCAGATAGCAGCAGCTTCACGAGGTGATGTGTTGCAGTTGGCAGCTCAGATTTTCCCCAGTCTCCTGGTGCACCATTTGTACCCACAGCAGCGAATCCCATCTCAGCACCATCTTGTAGTGCACTGCCGGTCCTGTCCTCCATCAGTGCGGAAGGGCAGAGTCCGAGCAGAGCTATGAGCACTCCTGGAGAAGACAATGATGTCCTCATAAGAGCTTTCTCATCTTGTCAGGCCTTGTGTGCCCACAGACAGGGCAGGTACACAGAAATGAAAACCCTCCTTTTCTTGGGCAGAGCAGTGCTTACATGAGGCCATGCATGGGCAGCCAGGTGCTTTGTGTCACCTGCTGCTCATCAGCCCCACAGCATGAAGTTTCCAGGTCATACATTTCCATGACCATGGGAGACCACTCCCCGCCCTCAGCCATCATGAAGAAAGCACTGTCTATCCTCCCATATCAGAGTAGAGATAATGGTGTTTCTTTATTGCTGCACAAAACAGGAGGAGCAGAGACAATTTCAGATGTCCAAAGTCACTGACCTACTCTCGGGCAGCCACAGCCTTGTGCAGGACTGACAAGAGGTGTGGGAACCCCACAACAACCAGGCTTGTAAGAATGTCTCCTGGGCTCGAGCAATTTCTTGCAGCTGCTGCTCACGTCTTTGCAGCCCTCCACTGTCAGGCACCAGAGGGCTGCCCAGCCTTCCTCTGAGGTGAAGGGAGCTTCTGGAGCACCAGTGGCGTATGCTGGCCCCCTGCTACTGCTTAGGGACTCAGAGAACTGCTGCTGCTCCTTCTGCATGTAGGATTGTATTGAGTGATGGTGCTCCAGCACCAGCTCCTTCCAGCCGCAGTTCCTCCCCTGGGTTGATCTTGGAGATCTTGGTGGTTTCAGCATGAGGGCAAAGCTTTTTCATCTGCTTCTGGTTCCTCCTCTCTCTCTGTGATCCCTGGCTGTGGCCAGGAGCACCTCTTCACTCTATCTACTGTGAGGCCTTTGTTGGAACCCTTCTGTCAGGAAAGTGAATGGCTTTCTTCTCCATTGCTCCCATCCACATTCTTTCTTGCTCCATGTCTGTTTGACCACTGAGGCACCAGTTTGGACCACAAGAAACTGACAAGAAGAAAGTCTATCCCCACTGCATCCTACGAGTATCACTTCAGGTGACATATCAGAGATGTCTCCTGGGGTCCGAATCCTTCCTTCCATCTGGGGCGGTGCCTGGGATGAGGTCCTGGCTGTTGGGTGATGCTGGCAGCCTCTGGCCTGCCTCATTGCACAGAGCGGTGGGGGAACCCAAGATTTGGTCATCAGCTGCCTGTACACATTGCTCGCTGGCTGTACCCCTCTGCTGCAGGGAGGGAGGTATGGCAGCAGACACTCCATGATTGCCCTGCAGAGCTTTGCTAGCTGGAACCAGCTCGGGCTGACTAGGAAGATCCTGCAGCTCCTCGGGGCTGACTCTTGATGGATGAACAGTGGTAGATGCAGTGGGATGGGGCAGAGGGAGGGCTGAGCTGAGCGAGGAGCAAGGCCCTTGTTTTCCTCTGGGGTTACAGAGGGCTGGACAAGCCCTGGAAGGGCTCCGTGGTGCTCTGCTGGGTTGCAGCAGCTCTGCTGTCACAGCGGGAAAGGGGTGGGGGCAGATGCAGGTGGTGCCTCGTCATGCCCTGCGGTGCCCGCGGATGTGCGCGGTGTGTGGGTGCTGCGGGGACAGCGCGGCGGGGTGGGATGCTGGGAGCGGGGCTGCGGGGGCTGCGAGTGCGGGCGCTGACGCTGTGTGCCCCGCAG
Seq C2 exon
ACGCCAAGGCGTACAGCTCGGACGAGGAGAAGCTGGAGGTGAAATCGGCAGCGACGCCGTGCAGCGAACGGGAGGAGGAGAGCTCGGCGGGCGACAGCGAGGAGGAGCCCTTCCTGGACGGGGCGGCCGCGGCCGCGCTGGGCCCCAAGGGGAAGGGGAAGGGCGGCCCCGCGGCCGAGCAGCCTCCGCCGGGCTCCGGGGCCGGGAAGAGCCGCCGGCGGCGCACGGCCTTTACGAGCGAGCAGCTGCTGGAGCTGGAGAAGGAGTTCCACTGCAAGAAGTACCTCTCGCTGACGGAGCGCTCGCAGATCGCGCACGCCCTGAAGCTGAGCGAGGTGCAGGTGAAGATCTGGTTCCAGAACCGCCGCGCTAAGTGGAAACGCATCAAGGCGGGCAACGTCAGCAACCGCTCGGGAGAGCCCGTCCGCAACCCCAAGATCGTGGTGCCCATCCCGGTGCACGTCAATCGCTTCGCCGTGCGCAGCCAGCACCAGCAGATCGAGCAGGGGGCCCGACCCTGAGCCGCGGCGGCTCCCGGACCCTGGGGCGGGCGGAGCGCCGGCAGCGGGAGGGGCCCGGGGCCGCTCGCACTCCTCTGTACATGTCCCTTATTTATTCCGTGTAAACTCTGTACATACGGCGGCGCGTCCGTCCGTCCGAGCCGCGGGGAGCGAGGGCCGCCTGCCCACCGCCACCCGTTCACGCCTGCTCCTGCCCCGCCGGGCCGGGGCCGCGCTGTCCGCCAGCGCCCGCCCGTGTATAGCTGTGATTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023647:ENSGALT00000039416:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.642
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=32.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]