HsaINT0068167 @ hg19
Intron Retention
Gene
ENSG00000164900 | GBX1
Description
gastrulation brain homeobox 1 [Source:HGNC Symbol;Acc:4185]
Coordinates
chr7:150845676-150864867:-
Coord C1 exon
chr7:150864098-150864867
Coord A exon
chr7:150846230-150864097
Coord C2 exon
chr7:150845676-150846229
Length
17868 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TGGCTTCTTGCTCCTCACAGCAG
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATGAGTCCGGAGGGCGACACCCCCAGCCCGCCTGCTCGCCCGCCCCCTCCCTCCTTATGAGAGAGAGGGAGCGCGGCGCCGGAGCCACACTGCGCCGAGCCCGCGCCCCGCCGCCACCTCGGCCCGGGAGCCAGGGAGCGAGCCCTGCGTGTCCGCGCGGGGCGCCCGAGCCGCGGGGCGCACGGAGGCGCCCAGAGAGGAGCGCCCCGGGGCGGCCGCAGCTCCGAACAAGATGCAGCGGGCCGGAGGCGGTAGCGCCCCTGGGGGCAACGGCGGGGGCGGCGGCGGGGGCCCGGGCACTGCCTTCTCCATCGACTCCCTAATCGGGCCGCCGCCGCCGCGCTCCGGCCACTTGCTGTACACCGGCTACCCCATGTTCATGCCCTACCGGCCGCTCGTGCTGCCGCAGGCGCTGGCCCCTGCGCCGCTGCCCGCTGGCCTCCCGCCCCTCGCCCCGCTAGCCTCTTTCGCCGGCCGCCTTACCAACACCTTCTGCGCGGGGCTGGGTCAGGCTGTGCCCTCGATGGTGGCGCTGACCACCGCGCTGCCCAGCTTCGCGGAGCCGCCCGACGCTTTCTACGGGCCCCAGGAGCTCGCCGCCGCCGCTGCCGCCGCCGCCGCCACTGCCGCCCGAAACAACCCCGAGCCAGGCGGCCGACGCCCAGAGGGTGGGCTGGAAGCTGATGAGCTGCTGCCGGCCCGGGAGAAAGTGGCAGAGCCCCCACCACCTCCGCCTCCGCACTTCTCAGAGACTTTTCCAAGTCTGCCCG
Seq A exon
GTAAGTGCTAGGGCCGACCAGGGCTGGCGGGAGGCCGGTTCACCTGGAAATTCCAGACAGGAACCTGCTCGGAACCTCGGCACCTCGGCACCTGCCTGGAGCCTTGAAGTCCCAGACCTTTAGATCGCGCGCAGGTTCTGACTCCAATTCAGTTCCAAATACAGCCTCTTTAGATTCCAGAACCCCCGCCCTGCTCTGTCCCCATAGCCCTGAAGGCTAACCGAAGACTTTGCAGTGCTCCCTTCACATTAGTGCCTTTCCCTCAGCATCCTAGCCATCAAGACTTGGCCCTGTCTCCTTTTCAGAATTCCTTCATTTTTTTCCTCCTCTGTCAGGGGTAGACAAGCTACAAGGATGGGATTTCCGGGGGCACCAAGATGGGGGTATGTTGAAGCAGCTGTCAATTCAGCAATGGAGGGCACGTTCTGGCTTCTAAGGAGATCATACTGACCCTAAAGGCTCAAAGGATAGGAATAGGCTCTGTGGATGCAGGGGCAAAAAGAGTGTGTGTGTGTGTGTGTGTTGGGGGGGGGGGGTTGCGTCTCAAAGCCGTGACTTCTGAATTGGCAGATTCAGAGCTAAGCCTTGAAGAACTGAGTAGGGGGCCAAAGAGAACATTAGCTACAGGAGGCCTAGCACACGCTGGACAAGTGCTGACTAGGAGACCAAGAGAGAGGCTAAAGGCTGGGCTGAGTTGGGTGTGGCCCAAAGATCTAGGGTGCAGAACCCAGCTAAGATTCAGCTGACAGATAATTCAAGGGCCCTGGACCCTCCATGAATGGTGCCCTCTCCATAGAGGCAGGGTGTATTAAACTGAACCTTGTTTAGAGTCCATTCAATTAGAGCCCTCCTGACCTCTCTATTGGTCCTTAACTCCTAGAAGCCAGAAAAGCTTTCTTCTGGCTAGACAGATTCAGGTGTTCTGAGTTCCAAAGCTTATACAATTTGCTGGGCCCTATTTAAGAAAAATAGGCACCACTTGCAAGTGTGGGGACTCTGATGCTTCAACATCTTTAGTATCAGGATGGAACCGCTTCTGCTCAACCATTCATTGCATCCAGCTTAGAGGTGGAAATGACCCCAGTAGGCCTGGGAGCTGACTTGAACAGAGACAAGAAGGGAATGCAAGAGTGCTTTTGTCCTTTGCCAGCAGAGATAATTCTTGATTATCAGTTATGGGGCCCTTTCTGACATTGTCCAAAGGGTTAATCACTCTTTCAGACCCCAAAGGCTGCCATGGGGCCTGTCTTCCTATTCTTTTCTCCTTTCGCCCTGGCATTTTGCTTTTGGGGATTCAGCTGTTGTTTTCTTTTTTGTACCTGGTTGGATCAGGAAGACCCAGTAACTGAAGTCAGAATAGCATCTTCTAAGGGGGATCATAAGGAACAGATAGAGCAGCAACTGGAAGGTGGGAGAAAATGTCCACAAGATAAAAGGGCCCAGGGCGGGAGCCTGGAAGCCAGCAGGATGATCTTAAGAAAAAAAGATTAGTATGATTGTCAGAATAGGATGGTCCTAAGGCAGAAAAAAGAGTAAGACAGGCCATCAAAGAGATGACTTTGGAGGAGATAGGACCTGAAGGTGTAACCAGACACATATAGAAAGAGATGAGCTGAAGAGAGAGGATGGAGGGGGGATCCCTTGGTAGCGGGGACTTAGGGGCATATGCCCAAACTGTGGGACAACAAGCAATTTGTCCCACCCTTTCAGGTCTGCTCAGTTCTTATTTTGACCTATATGTATAATGGGAGCTCTTTTCTGGATCATATAGTATATTGGCTATAAAAACAGACATTGAGAAAGAGAGGAATAAGCAGAGAAAAAACAGAAGAGAAATACTGATGAAACAAGAATAGAGGAAAGGACCAGGGGATGAGTTGTATACTGGAATATACAAAGAGAACATGAAGAAGGAGAGGGTTCTCTGCTGGAAAAGGAACTCTGGACTGGACTAAATGAAAAGTGAACTGTATTACTGGACCACAAGTGTGAGTGAGTGTGTGTGTGTATGTGTGTGTGTGTTTGTGTGTGTGTGTGTAAGAGTTCTGTCATGAGAGGATTTGGGGGGAACTAAATAAAAATACTAGGGGAATAAGGAAAAGTTTCAACACTAGGAGTAATTTTCTTTAAAGAGTTTTTAATATTGAGAGTGAGGGGAAACTGGAATTTATATAAAATGACAGAGCTTCATCATCCGAGGAAAATGTTGAAAGCAAAAAAAAAAAAAAAAAAAAGAGGGAAATTTGTGTTGTTCTTGGAGTAAAGGCAAGGAATTTTTTTTGCCAAGAATAATGGAAAGGAGAACTTACAGAGGAAGAATTTTGAAAAAGTGCTGGAATAAAGGTAATCACTCATGCTGGGAGGAGATACATGTAAAGGGTTTATAGTGGGGAGGCTGGGACACAGTAGTAAGGAGGAGAGACTTCAGAAGAAACATTCAAAGAGCATGAGGAATGAGAGCTCCTATCTGTGACGGCTGCTTCTGTCACTCTCAGTAAACACGCTTCCAACTCTTCCTGGGCAAGCCATTCATATCCACCTTCCCAATCTTGAGTTTTTCCAGAAATCATTGAGAAAAGAAAATGCAATTCCAGAAATGAGAGACATAATATCAATTTGGGGACTGATGACACATGACCCAGGCTAAAACTGGTTGGAAAACAAATACTCTGTTTTGGGAATTGTATTAAAGTATTTGGAGTGAAATGACAGAGCTCTCTGCTGTGAATAATGGGATTGAAACCTCAACATTAGAAGAATTTGGAGAAATAATGCAATCTTTAAAATGACAGAGGAGAAATTGTTTTCCTTGTGTGAATGAGTGACATGGGTCTGAAATTATTATTAATTTACATTTGTTTAGTGTTTTACAACTGCTAACCCGTTTAAATAAAATCATAGTGTAGATAGGCCAATTTGGAGAATGATTAGTGATTTTCTTTGGGAATTACAGGGACTATTTTTTTTAATTTGTTGAGAGTTAAGACAGGTACCATTCTCTACTAGAACTGAGGAAGGATAAAAGGAACTTTGTTATGACTTGATTGCAGGAGTAGAAGCTATATTAGCAGGTGAAAAGAAATATGATATATAGAAGTAATTGGGTAGAAAGTTATTGAAAATGGTAGATTGAAAAGAATCACAAGTTTGGAATGTGGGAAGCAGTGGGGAAAATTGAGAGAATGTCTTTTAGTAAGAGTAATAAAGAGGAGAGAATTCCGAACTGTTAGGAAAGATTAAAGTATGACTCAATAGAAGAGCCCAAAGCAGTGCTGGCTAGTAGAGATATATGCAAGCCATATATGTCATTAAAAATTTTTTATTAGCCACATTAAAAAGATAAAAATAGGTAAAATTAATTTTAATTTTATTTAACTCAAGATGTCCAAAATATTATTTCAACATTAATCAATATTAACATTTTAATGATATAATTTTATATCTTCTTTTCATATTAAGTCTTCAAACTCCAGTGTTATTTTACACTTCCAGCACATCTCCATTTGGACTAGCCATGTTTCAGTTGGTCAGTAGCCACAGGTGAACAGTGGTGACCGTATTCAACATGACGGATCTAGAGAGTTTTAAGAACAGAGTTATGTGAAAGTGATGGAGGAAAAGGAGCTTTGAATTGGATAATGGGTCCTCAGTGTATTAGGAATAATGGAGAGAAGAGAGCAGGAAGCACTAAATGACAGGAGAGAACAGAATTCTGTCTTAGGTGGGATGGGCAGAGATTATCTCGTGTGTCTGACGGTTTGTGTGAGCTCTGGCTGAGAGTAATCAAAGCTAACTTGCTGTGTGCAAGATGTGGTGCAGATATGCATCACAGCAACAGTGGGTGAAAAGGACGCTATGTGCTGGGCAAATGATGAAAAGAGCCGTGAATGTGGAGAAATGTAGAAAGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGATGGGCAGATCACCTGAGATTGGGAGTTTCAGACTAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAATTAGCCGGGCTTAGTGCCGCATGCCTGTGGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGATGTTGCAGTGAGCCGAGATTGTGCCATTGCACTCCAGCCTGGGGGGCAACGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAAGGCAGAAGAAAACTTTGAGTTGGGGGTGTCTAGAGCAATTATTCACTCAGGGGAAAAAGAAGATTGGATTGCCTGAATGCAAAAGCTTAGGAAGTGAGGAATGGTAGCTACTCCATATATATTTGTTAGATGGATGACAAAAATGTAGTGAGAGATTGACGTGAAAACTAATACCAGTATTGGGCATAGTGAAGAAAACATTTGTAGTTTAAGGTTATATAGAAGATATGGGAATATGATGGGACAAACTTGAGACATGCTGTTGTAGTAAACATTGTTTTTTTAAACTAAGCTTAAAAAGATTTGCTAATTTCTGAATACAGATTGGCAATAATAATTGAAATCATGCAAGGAGACCGGGGAGACTTCCTAGGAGCCTCGTATTCAAGTGCTGATTACCGTAAGCTAAGCACCTGAATGTAGCTAGGGAACATTTGGATGACCATTAATTAATTTCTGAATAGGTATCCATTATGATTGTCAAGATATGATATTTACTTATGAGAGGAAAACAGAAAATGATAATATGACGTGGAATTAGAGAATTATGTTGTTAGAAACAAGAGGGAGATTTTTGGGGGAAGTGATGGAGATCCAGAGTATGTTTTCCTAGAACTTTTGAGCATACAGTCAGAGTGATTGCTGCATTGACATTTATAGAAAGGCAAATACTGCATTAACTTAATGTGATTGATGGAACATTTGTTTAGGAGTTGTGACACGTGGATTCAATTCTCACCTTTGTCACTCATTAGTTGTATAATTTTGACAAGTCACTTAGTTCAATTCAGGGAACATTTATTGTCTGTCTATTACTACAGACTTAGTATATTTGAGACACAGTGGGAGATTCAAAGTCACATGACTTCTCTAGGCTTTGGTTTCCTCAGCTGGGCCAAAAGTTTTGGTTCAGATGATTTTTAATGTTCCTTTCAATTCTCTAGGCCTCAGTGTTTAAAGTAGAGCTCTCAACCTGGACTCCACAGACCTTTCATCAGGGGATCTGTTAGCTATGGGTGGGAGAAAATTTATACCTTTATTTTTTATCACTTCAACTATGAATATAGGCCAAAAATCATAGTTGTTTCAGCGTGCATGATGTTTTTGTCAGTGAAAGAAATCACAGATAGTTTGATATACATTTACAGTCTTTGGAGGGACCTTGTTTAATGAATAAAGAAACATGATTATATCACAAGTTCTGTTTTAAACTATATTTTAATATACTTGACTTCAAATGTAATACTATGTATTTTATGTTGTATGTCTAAAAGCATTATTCTAGAAAGTGTTCATAGGCTTTACCAGACTGACAAAGGACTTAAGGGCACAAAAGGGTGAAGAACCCCCTGGATCAGAGATAGACCTCAGGAGTGACAACAGGAAAATTTTATTAGGAGGATTAGAATCAGAGGCTAAGATGCCCTGTGCCATAGTGAAAGTAACCCTTCAGGGGTTGGCAGAGAGAAAGAGTCTCTAAGGTGGCACATGTAAATATGGAGATATATATAATAGATGATTAGGAGGAGGATTCTTATACTTGGAGTGGCAGGCATGAGTAGACTATACTGGGAATAATGCAGAGAGGTAATATTTGGAATAATGGGGGAAATATTTTAATTGGAAAGAAGGAAGAACATGCATTGTGAGCAAAGTGCTTTGCATTGAGAGAAATGTTACAATAGGAAGCAAGAATTCTGCCTGGGAAGTAATAGGAAAAGAAAAGTAATGGGAAAAGAAACTGATTTGGAATTAGGAAATAGAAGAGAAGTAATTGAGTAGATGTATAAAAGAGAGAGAGATTTAAACAGGAATGATGAGAAGGAAAGAATTTGGTGGGAAGAAGGAGGGAATGGGGAAATGCCCTGTGCTGGGGTAGGAAAGAAACTTTGTGTCTGAACCAGTGAAAAGGACAGAGCTCTCTATGCAAGGTAGTGCTCATAACCGACAAAAGGCCTGGATTAGGAGTGTAGTAAAAAAGAGGCGGGAAATTTTTTTTGGAAGTCTGAGCTTGTTGGGAGAAAGTTATCAGCTTAGAGTACTGTGGATGAAATGCTAATGTGCTAGGACTAATTGAGAGAAAGGGTGATAGGGAGAAGAGATGCTTGCATTTGGTGCAATAGAGGAGTGGCCTACACAAGTTGAATTCAGGTGTAGTAGAAAGAGACAGGTGCTGCAAGCAGTGTCTTCACTGGCCATTATAGAGGGGAAAGCAATGATCCTTATGTGATGAAAAGAATCTGTATTAGAAGTAGAGGGGCTATAGGAACTCAGATGAGGGTTATAAGCAAAAGGCACTGTTCAAAATATGAGGACTGGGAGGAACAGGAAAATACTTCTGACTGGGGATAATGGGAGGCAGATGTCTTGACTGAATTATGGAGAAGATGATATTATAATAGAAGTAATGGAGAAAACAGAACTCTGTAGTGGGAACAGTGGGAAGAGAAGTAATGCAGAGGTGTCTCCATTGAGGGAAGGAGATGTAATTACCCTGAGTGTAAAGGCAAGAAGTGCTTTGTGCTGCAATTAATAACTATTCTATGAATTATGTGTGGACACTACAAGTACATAAACTGATTAGCCTAAGCAAAGGAAGTGTCTTAGCTTCCTCATCAGTAAAATTAGGGGCTTGAATTAGGTGATCTCTAAGATTCCTTCCAGCTCTACAATTCTGTTTTTATCTATAAGGATATCTTTATTAATGAATTATTTCTTTTAAAAAAGAAAGGCATCCTGAGCGAAGGGCCTGGGGAAACTATACTTTTCAGTGGTGTTGTAGTCATGGAGGAGGAGGAGGTAGCAAGGTAAGATGCATGCATCTTGAGGTGAGATCAGGGCTGGTCTTTACGGTGGAAAAGGCTTGTCTTCTGGGATTGGGGAGGGCATACCCAAGCTATGACTGTGTATAGCTGTCACATTAAATGAGAGAGAGAAACATTTGATAAAGACGGTAGATTTTGTATAGGCCAAATAGATTGGGGATCAGTTGGGACCAACTTTAACTGGCGAGGAAGGAAGCACTGGAAAAGAAGAGAAGTTGTGTTGTAAAATTGGTTCCTGGCCTTCTATATTGTTTCTGTATCTGGAACAATATTTATGATAGGCTGACATTAGAATTCAGTCTCGTCCTAGTATGGTGGCTCATACCTGTAATCTCAGCTCTTTCGGAGGCCGAGGTGGATCACTTGAGTCCATGAGTTTGAGATCAGCCTGGTATAACATAGTGAGACCTTGTCTCTACCAAAAGAAATTTGCCAGGTATGGTGGTGTGTATCTCTAGTCCCAGCTACTCAGAAGGCTGAGGTAGGAGGATTGCTGGAGTCTGAGAGGTTGAGGCTTGAGGCTGCAGTGAGATTTGATTGCACTACTGCACTCCAGCCTGCACAACAGAGCAAGACCTTGTCTCAAAAAACAACAACAAAAATTCAGTCTCTGCCTGGGTGCAGTGGCTCATGGCTGTAATCCCAGCACTTTGGGAGGCTGAGGCTAGGAGTTCGAGACCAGCCTGGGCAACATGGCAAAATCCCGTCTCTACAAAAAATACAGAAAATTAGCTAGCAGTGGTGGCGCACACCTGTGGTCCCAGCTACACTGGAGGCTGAGGTAAGAGGATCCCTTGAGCCTGGGAGGTGGAGGCTGCACTGAGCCAAGATCATGCCACTACACTCCAGCCTGGGTAACGGAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAATTCAGACACTTTTTTTACATTAAATGTTAACAAAGAGATGAGGTGTAGTGCAAAGGAGCAAGCATGGGCTTTGGTCAGGAAAGCTGGGTACAGATGTTGGTGGCGCACTTTCTTTGTGATCTATAGGAAGTACTCACCTGTACAGTCTGTTTCCTCACCAGCAAAATAAGGACAGTAATATTTACCTCACAGGGTTAAGGATTAAATGCACAGATATTTGTGCAGCATCCTGAAAGTAATAGGTGCTCAAGAATTTATCCTTATTGTCCTTTTCTTGGAAATATGTGAGGCGCTTTCCTGGGAATTAAGTTGGGAAAGATCTTGTTACTAGGAATGGTGTAGGATAGGTGACACTCTATGTATTGAAAAGGACAAATATTTCTGGGAGTGATGATAGAGTAGTTCTGTGTTCTGAGAACTGATTATTCGGGGACTGCCAGGAAAGAACATTGTACTGAATCTAATTAGGGGTAGATTTCACATGTGTCTTTGGCTCTTTCTCCCTCTTTTCGGTTTCCCTGTCTCACATTTTGGTGTCCTCTGTAAATCCCAAGCCTGCTGAAAACCCCTTTACTGTGCCTCACTAGGGCCTGTTCTCCCTTTCTCTCCATTAAAAAAAAAACAAAAACAAAAACAAAAAAACTCTTCTTGTTTCTTTATCAAAAAATTTCTGTTCCCTCATATGTTTCATTTCAATTTGATGTTAAAATCAAAGCCACTGGATTAAACTAATTCACACTCAGGTGGGTTGAGATTTTTTAAAGTCCAGATGAATTTCAAACTGGTGGAATCTTATGTGGTATTACTATGAATAATTTTAGGTAATATGGAAACATTAGCGTGGATGGGAGAGTTGTGGGAGTGAGGTGGAGAGGTTTACTTTCCCTGGAGTCATGTGACCATTGTCTCTTCTGGTTACAGCATCGTACTTAGTCAGAACTCTTCGGGTTGGTAGTGATAGTGGCTCAGCTCTCAGCTAAAACGGGGATTTATTGCTTCTTGTAACTGCAAAATACCTGAGTGGATTCAGAAATGTAAGTAGTGTTGTGAGGTCTTTCTTTTTTGCTCCCAACCTGGCTCCTCTCTCTGTCTTCACCTCATTCTCTCCTTAAGACAGCTTTCTTCATTTAGCTAGAGGTAAGAGAAGGCACAAGCACATGCAGTTCTAAATTTTTATAATTTTATAATCCCAGGTTATAGGACCTGAGTGGATTCTAGTGTAAATAAAACCCTGGGATGACTAATTCGCTAGCTTGAATCATGACTCCAGGGAGATAGCATATTACAATTGGTCAGAACCAAGTCACATGCCCACCTTTAATCAGGAAGGTAGAGAAATGCTGTTGACAGTCCCACCAAGTAGTGGGTAGTGTAGCGGGGAAGCAGTACCTAAAGGAAGCGGGTACTGCTACTGAGCAAAAGGGGGAAGGTATGCTGGGCAGACAAAAACAACCCAAAACGGATGTCTACCTCAACCAGAAAGAAGGAAAAGAATGGGCCTTCAGCTCCCTTTCAGTATTAGGAAGAAATACTGAAAGGAAATCCTTTGTTTCCCCACTGGCTAGCTAAATAGTGATAAAGAGATCCTGGCAGTGAAGGTCTGAAGAGAGTTCTGTAATGAGGAAGGCAGAGAGAGATGAAGATAGTACAAAAATTTCCATCGCTCAGTGAGGCTTTCTGTTTGCTCTGATACCTATACGAGAAAGAGCTCTATGAGGAATGAGGGAGAAAGTTGTAAACTAGAAGCTAGAGAACATTGAGTGTTTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCCCTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACTATGTTGGCCAGGCTGGTCTTAAATTCCTGACCTCCTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGACGTTATTATTTTCAAAGTTAGAAAATACACTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCTGGGCTGGAGTACAGTTGTGCGATCTCTGCTCACTGCAACCTCTGACTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGCGCGCACCGCCATGCCTGGCTAATTTTTGTAGTTTTAGTAGAAACAGGGTTTTACCATGTTGGCAAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCGTGCCCAGCCAAAAATGCATTTTTAAATAAAAGAAGCACTGACTGGTAAGATTACATCATACAAACCAATAAGGACAAAAGAACGGGAGAAAGATTTGGTGGGAATTTTGTCTCAGGAATGACAGGAAAAGTAGCTTGTTAAAGGACAGGTGAAGTTTGGTGAGTGAAACGTCTCTGATGACAATTTTAAGAATCTTCTCTGAGAATGTTAAGGGAAGATATTAATGATTAGGCTAGGACTCTGTGGTAGTAAGTGAAAGGGATGAGATCTTTTTCTTTCTCTCTCTTTTTTTTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTGTCGCCCAAACTGGAGTGCAGTGGTGTGACCTCAGCTTACTGCAACCTCCGCTCTCAAGTTCAAGTGACTCTCCCACCTCAGCCTCCCGAGTAGTTGGGATTACAGGTGTAAGCCAATGTGCCCAGCTAATTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTGGCCAGGCTGGTCTCCAACTCCTGGCCTCAAGTGATCTGCCCGCCTTGGCTTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACTGAGTCTGACTAAAAGGGGTGAGATCTAAACTTGGATTTGATAAGAAGGTTATTTATCTAATGAGACATCTGGGGAGAGGGCTTTTACAAGTGGGAGAGGAGGAGAAAATAGTTTACTGGAAAGAATGAAAACAGCGTTAACTGCAGCTTTAGGAGACTTGACATCCTGTCCCTCTCTGATGCTAGACCTGACACTCTGTCCCTCTCTGCGTGACTTAGGAAATCATTTAATCTGTCTGAAACTCCATTTTTTCACCAGAAAATAAGGTTACTACCTCTCCTATTACTACTAATAATAGATCTGCTCTACGTCAGTCAACTGCTTGAAGATAAGATAGTAAATGTGGAAAATGTTTTGAAAAGTTAAAGATCATACAAGAGTGCTCTTGGAAATGGCAATGTTAGTATGCCCTGAAAGGAGGTCTGAGCTTAAAATGGTGGGAAATTGCCCTGAACTTGTCATGAAGCTGGGAGGGGTTCTGGATGACAGTGATGTAAAGAAAATTTTTTTGACTTGGAGTAAAGAATGCTAAAGAGTCATAGGAAGAGTGCAGAGAGAGAGAGAGAGAAAATGAAAATGAATGTTTCCAATTATACCTAAAATTATAGGCAGGAGTAGGAGCATAATGGAAGCATGAAATTCATGAGAATGAGTGAAAAATAAACTGAGAGTGAACTGGCTGTTTTAAACAATCGGAGAAAGTACTGTTTTTGAAAAGAACAGAGAAATAATTCTGTATTGGGCATGATGAAATGAGGATTTAGAAGTGGGAGTGATGGCAAATATGTCTCTTTTTTGAGGAATGACCTGTGTTTCTTCCCACCTTTTGACCCCACCCAAACTGGAACTGGATTCAGGGAGATGAGTAGTTGGCCTGTGAAAATCAGGAAGAGATTCATTGTCCTAAGATGGGCGGACCAGGAGAGAACCTAACCTTTCCTAAGAGTGGTTGGGGCAAGTGTTAGGATAGTTGTTTTTGAAGTAGAGAGAAGATAAGTCAGAACTGAGGGGCTTCTCTTCTATGAATACTCAAGATAATTGATTTCCTACGGTGATAACAGCAGGAGCTGCAGTAATGGGGTGAATGAGGGACAGCACAGGGGCTAGATGAATTCCTGTAGTTGGGAGCATAAAGTTGTCCTCCACTCCCTCTGGCTTTTCCTCCTCCTCCTCGGTGCCTCTAGCGCAGGCCTCCCTGCCTAGATGGAGTGAGTCTAGGGCATTGTGTTCTTTCTGCTGGAGAACACCTACTATGGATTCTTTGGCCCTTGATTTCTTCCCTAGCCCGAACTGACCCATTACCGAGATGGCCTTCTTTCTGACTCTGGAGCTGCTCCCCTTCCTCTTAGAAGGAAGGCCCCATGCAAGCACGTCTCCTGGAGCATGAGTGCTGTTCTCTGGAATGAGATTAATGCCCTTGACGTGAACTCTACAAGTAATCAAGGTTCAAACCTTGTGATTTCTAGTTTTTAGGATAATAGCATCCACCAGGAGAATTCACATGAACTCTGTTTCCTAATGACCAGTCTGTCCTACCATCACTTCCCCTGACCAGAGGCCAAACTGTTTTTCACAGATTAGACTCAACCATAGGGAACAAGCTGGAAACTCAATATAGTCTTCTTATTACCAATAATATCATCCTCATCATAAAGGACAGAACCTTTCTGTCTGTTTGGCCTACTTACCTAGCACAACAAAATAGTTTAGATTTTTAAAATTTTCATTTTGCTGAAGTATTCTCATCAGAATCATTATTTCATTATTTTCCATAGGAAATTTTTTTCATGCAAACCAACAACTTGCAATTTTCCATGTAACATTTTTAATTCTTATTTATTTATCGTTTTTTGTTCATACCAACCAATTATACTGTCTGCAATTGGAAATTTACTTTTTTTTTTCGAGACAGAGACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGCTCTCTGCTCACTGCAATCCTGCCTCAGCCTCAAAAGTAGCTGGAATCACAGGCGCACGCCAACACCCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTGGTGAACTCCTGACCTCAGGTGATCCACCCACCTCAGTCTCCCAAAGTGCTGGGATTACAGGCATGAACCACCATGCCCAGCCAGAAATTTACTTTTATGAACATTGTATCTACCAAGTCCAGTTATTCTAAATCAAATTTTGCAAATAGAAATTTTATCAACAAGATTTGCTTCTTGCCAGCCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCGAGGTGGGAGGTTTGCTTGAGTCCAGAAGTTTGAGACCAGCCTGGGCAACATAGTAGGACCCCAACACTGCAAAAAAGTAAAAAAAATAAAAATAAAAAAGTTAGCCAGCCATGGTGGTGTGCGCCTATGGCCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCACTTGAGACCAGGAGTTCAAGGCTGCGGTGAGCTATGATTACTCTACTGCATTCCAGTCTGGGTGACAGAGCGAGCGCCTGTCTCAGGAAAAAAAAAAAAAGATTTGCTTCTTTCAATTTTTAGTCAATAGCAAATTTTTATGTGCAATTTTTATTTTTTACTATTAATATTCATTATAAATTGGATAAAAGGAAATATTTTTATTTCTTAGCTAATTCCAGAGAAAATAGTTAGCTGTTTTGAAATTTCCACATTGTAAAGGATTGCACTACTGTTTTGCTCATTCTCTTTCTCTGCCTGTGTCTTTGGCTACTGCAGTCTACAGTGCTCCTTCTCTTGGGGCAGCAGAGAGCAAATGGCAGGGCCAAAATGTTTTGCTTTGCTTCAAATGTATCAGTATTCTGGGGGGAAAGGTAGATGAGGCATTTCTTAAAAAGTACCTTTTGCTTTCTTTCCCCTGATTTTTCCCATATTTTCTCTCTCCCTTCTCTAGACTTTTCAGCCCTTTTATTTTATCTGACTCATCATTTAATTTTTCTGCTATTTCTCTACCCCACTTCTTTCCTTCCCCAGTCTTCTTTCCACCTGCCTTGGCCTTTCCTTCTCTCTCCCACTCCTTGTCGGTCTTCCTCATTGTCCCAGACTCTCCTCTGAGGCATGTGGCTGTATTTTCTCCTCTCGTTGCTTTCTTCTATTGTCCCACCCCATTTCATTTCAAGAGTTGCTTATCAGAGTCTTCAATGTCATGATTATAAAGGCTCAGAGAGAAACTCTTGCCCCTGCCGCTCAGCATCCCACTGGGATCAAGTAACCAAGAGAGGTTGTGAACCTGTGCTCCTTGTATGGCTTTAAAAGCAGCACTGAGGGTGGCCGGCTCATGTGGGCTTCATTTTATGGATCTGTCTGAAGACAGAGGGATGGATGATACGATCTCAGGAGGGCCCTGCCAGATCGGGAACCTGGGAGCCTCATCTCAATCATCATCAATTTAGATTTATTGGACACCCCCTGGGTGCTTGGAGTTGTACTAACTGATTTTATCCTTCAAGCCTCGAAGTCTAGTTTCTGCCTTTTTAGCACTGTTTAACATATTGTAATATTGGGCTGAGTTTGTACAAGCCTTTGTTATTCTTTTTGTTATTATTTACTACAAACTATGTTTTAAAAAATTAAAATAGAGGATTTACTAATGGTATTAGGATTGTCCTTAATTTCTTTAAGCATCCTATAGATTTTTAAGATCCTATAGATTCCTACTGCATATGAATTCCTCTCCAGCTAATGTGAGATCTGAGGGCATTCTGAAAAGTGGGAAGGATAACATTCATAGGGAGATGTCTTATGCACTGGAGCTGGGCGGGGTGGGGTTGTGGGGAATATCGTCGGAGAGGCTTAGGAAAGGAAAGGACAGGGAGGGAAAGAAAGACGGGGAGCACATGCATGAGCATTTGGAAATCGTTTCTTTTATTTAGTCAACAGATGCTTATTGAGTGTCTACTCTGTATTGAGTGTCAGGTCATTTTCAAGACACTGAAGATATTGCAGTGAATGAGAAATATTCAGAATACCTACTTTCACGAAGCTATAGTCTATTAGGAAGAGACAGCCAGTAAAATAAATGAATAAAATTGGTAAAATGGACCAAAGTAACAAATAAATCGGAGAAAGGACATAGAGAGTATCAGAGGGTTTAAATTTTAAAAGGATGACCAGGGGAGGTGTCACTGATAAAGACCTGAAAGAGGTAGGGAATAAGCTAGTGCAAGATCTAGGTGAAGAGTAGTGTATTCCAGACAGAAAGAGGAATCATGGGCCAGGTGGAGTGTGGAGGACAGAAGCTGGGAAACCAGTTAGAAGATGACAGTGAACCAGGTCAGAGATAATTGTGATGTGGACTAGTTGGAAGCGGGAGATAGGGAGAAAGGATTGGGCTCTGGGGGTATTTTAAAGGCAGCAGCACTAGCAGGGCTTGTAGATGGACTGGATGTGGGTTGTGAGAGAGAGGAGTAAAAAGATGGCATCGAGGTTAGGTTTGAACACACAGAGGATGCAGTTGCCATTAACTGAGATGGGGATGATGTGGATAAAGATGAGAAAGAGCTGGTTTGGGGGAATGATCTGATTGGAGTTCAATTTGGGGCATGTTAAGTTTGAGTTCTGTGGAAGTGGAAAATAATGGGAGAAGAGACCTTAATGAAATGAAGGAGGAAACCAAGGATGTGAATCTTAGAGAAAACAACATAGATTTGGCTAGGGGTGAGATAGAGGGGAAAGAACAGGCTGATGGGAGACATTATGAGGGGCGAATTAGCTACAGACAGGATACAGTACTTACCCAGATGGGTCTTGATGCTGGGCGCCAGTGAAGCCTGAGCAAACTAGTAAAGAAGAACAAAAGCCATTGGCTGGTGAAAAGCAATGTACAGGAGTGGCATGGGAAGACTGGGGGAGCCCAAACTGGGGCATGCCGCATGGACTTTGAGAAGGTTAGAAGAAACAGGAAGCACTCCAGAAAGAAAAGGAGAGGGATGAAAACACCTTCGAGGTATGAAGTTGATTGGGATGTAGATGGGTGATGTGGAAAAAGGTTGAGAGTTCTGGCCACTAAGGAAAATGTCAGCTGGGCGCAGTGGCTCACACCTGTAATCCTGGCACTTTGGGAGGCCAGGGCTAGAGGATTGTATGAACCCAGAAGCTCAAGGCCAGCCTGGGCAACATAGTGAGATCCTGTCTCTACAAAAAAATAAACAGAATTAACCAGGCATGGTGTGTGCCTGTGGTCACAGCTACTTGGGAGGCTGAGGGTGGAGGATCCCTTGAGCCTGGAAGGTCAAGGCTGCAGTGGGCCAAGACTGTGCACTATACTCCAGCCTTGCTGACAGAGTGAGAGTCTCACTCTGTCTCAAAAGAAAGAAAGATAGGAAAGATAGGAAAAGAAAATGTCAATGTGGCTGTTGAGGAAAAAGACCAGGTGTAGACTGCACCTGTGAGGGGGAAGGGAACTTGGCAGGGGGTGGGGCGGGGTGTGCTGAAGGAGAACACCAGGAAGCTCTGACTGCCAGGAGATGTTCTATCTGTGAACACACACACCCTCTTTCTCTAATAAAGCCTTTCCCCGTGCCCTGAATTTAGTTTACTTGGAGTTGTATTCTCAACCTCTGAGTCTGCTTATCTCAGGCATATCTGATATGTGGCCGATACAGGGAGATGCATTCCTACATATAGGTATGCAGGCCTCCTGCCTTTGCACAGTGGACACTTCTGGAAAGGAGCTGACTATTCAGCTTACAGATTATCCATTTTCTCTTGTTCTCCTGCCTATTGATTGTCTTTTGACTTGTTTCACTGCTTTTTGGTCCTTTGAGTAGAAAACGGAGTTTGTAAAACTCACTGAAAACATGTGTAATGCATTATTTGCAGTTCTGATATAAACATCATTGGATACAAAGATTAAAACCAATGGTTGAATTAAGTTTTAGAATTGTGTGGATTAAAATGTTTATATGCTTGTGATTACAAATAATCAGTATTCTACTGAATCAAAATTTCTTTTTTACCCTTTCCTTCTCTTCATTTGTCCCTGTTGCACTTTTCCCTCTTCCTCCTCCTCCTCCCATATTCCTTCCAGTCCTCCCAGCTGACATCAAGCTTAGGGGCCTCAGGATTCTGAACTTGAGCAGAAAACAGCTGTTTGTGCTGCTCAGGCATCCTTGGCTGGGGAAAGGGGAAGGTGGGAAAGAGATGGTTTCATTTTAAGGTCAAGGGTAAGGATTGAAAGGGGATCAGGAGGCCTAAGTAACTGGGAGAAAAAATCTGGCCACACTCAAGGTGCTGCATGGCTGGGAGCCATGGAAATGAGGTTCAGGGACTGCAGATCTAGGGAAGAGGGAGAGGAGGAGACAGAACAGAGGCCATGAGACAGCTCTCGTCAGCTGGGCCAGATGAGGACTCCTAGGAGAAGTGCAAAGGCTGAGCCCTTCTCTCCCCGTCTGTCCTGCCAAGGTCAGTTCTTCTGCATTGCTTCACTCCTCCCCCCAGTGGCTCCAGAAGGATCCCAAGCCGGGTCCCATACTGCTTCATTCTGGCACCTGAGGCTGCGAGGCCTGGCTCTGGAGGGGTGGTATATCACTGCGATGCTGGGCCCTTGGTCTCTAGGTTCCGAGAAAGCTGGGGAGGTGGTGGGTGCGAATGAGATGGGGGTGGTGGGGAAGTTGAGGGGTCATTGTCCACACACTTATTGCCTCCCACACTTTTCCGTAGTGAAATCTGTGCTGGTTAATACCTTTCTTCCCATTTCTTTGTTTTCCCTAAACCTCTTCCCATTCCATATCCTGGACATACCATCCTTCTGCCTCCTGTCCCTCCCCATCTTCTCCTCTCCATGGCTCTCTTTTTTCCTGCTCTTGTCTCCCAACCCCCCATTTCTGGCCATGGTTCCATGGGCCTCCTCCAAACTCTCTTTTTCTTGCTTCTCCCTCCCCATCCATTGGCTTCTTGCTCCTCACAG
Seq C2 exon
CAGAGGGGAAGGTGTACAGCTCAGATGAGGAGAAGCTGGAGGCATCAGCAGGAGACCCAGCAGGCAGCGAACAGGAGGAAGAGGGCTCAGGCGGTGACAGCGAGGATGACGGTTTCCTGGACAGTTCTGCAGGGGGCCCAGGGGCTCTTCTGGGACCTAAACCGAAGCTAAAGGGAAGCCTGGGGACTGGAGCTGAGGAGGGGGCACCGGTGACAGCAGGGGTCACAGCTCCTGGGGGGAAAAGCCGACGGCGCCGCACAGCATTTACCAGCGAGCAGCTTTTGGAATTGGAGAAGGAATTTCATTGCAAGAAATACCTGAGCTTGACAGAGCGCTCTCAGATCGCCCACGCCCTCAAGCTCAGTGAGGTGCAGGTCAAGATCTGGTTTCAGAATCGACGGGCCAAGTGGAAGCGCATCAAAGCTGGCAATGTGAGCAGCCGTTCTGGGGAGCCCGTAAGAAACCCCAAGATTGTTGTCCCCATACCTGTGCATGTCAACAGGTTTGCTGTGCGGAGCCAGCACCAACAAATGGAGCAGGGGGCCCGGCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164900-GBX1:NM_001098834:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=NA C2=0.668
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=30.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)