BtaINT0065871 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011120 | GBX1
Description
gastrulation brain homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4185]
Coordinates
chr4:114520834-114534555:-
Coord C1 exon
chr4:114534528-114534555
Coord A exon
chr4:114521366-114534527
Coord C2 exon
chr4:114520834-114521365
Length
13162 bp
Sequences
Splice sites
5' ss Seq
AAGAGAAGC
5' ss Score
-5.61
3' ss Seq
GCAGAGGGGAAGGTGTACAGCTC
3' ss Score
-12.12
Exon sequences
Seq C1 exon
TGCTCATTGGGAGAGTGAGAGGGAAAAG
Seq A exon
AGAAGCTTGAATTGGTGTGACAGAAGAGTGACCTTCACGGGTGAATTCAGTTGTGGTCGGAAGGGACAGCACAGCAAGGCAAGTCGTCCGGAGGCAGTGGCTTCCCTCCCTTTCCATCATGGAAGGGAAAGGAATATTCTCCCCGAGATGAGAGGAGGTGTCTTATTAGAAGCAAAAGGCACGGTGGGGCCAAGAGTAACAGAGACCAGGGTTGTGTGGAGAAAGCACTTTGTGAAAATGAGGGTGGGGGAAACTGGAAACTCCTTCTGAGCTGGGGGCAGTGGGAGATGGATTCCTTGACTGAGAATTATGTTAGCTTTTGTTCAGTCGCTCAGTCGTGTCCCACTCTTTGCGACCCCATGGACTGCAGCACGCCAGTCCTTTACTATCTCCCTGTCCCTCACTATCTCCCCGAGTTTGCCCAATCTCCTGTTCATTGAGTTGGTAATGCCATCCAAACTTCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCTTCAACCTTTCCCAGCATCAGGGTCTTTTCCATTGAGTCAGTTCATCACATCAGGTGGCCAAAGTATTGGAGCTTCAGGTGTTAAAGTAGACGTCTTAGATAAGCCGGAACTCTATACTGGGAGCAATGGGAAGAGAAGCGATGCAGGTGTTCCAGGAGGAAGGGAGACGAAATTACCCCGAGACTGAAGGTGAGAAGCAGTTTGTGTTGGCATGCGTGGGTGCTCAGTCAGTAAGTCATGCCCAGCGCTTTGTGACCCTGTGGACTGTAGCCTGCCAGGTTCCCCTGTCCAGGGGATTTCCCAGGCAAGAACACTAGAGTGGGTTGCCATGCTCTCCCCCAGGGGATCTTCCTGACCCAGGGACTGAACCAGCTTCTCCCTCTGCTCCTGCATTGGATGGTGGATTCTTTACCACTGAGCCACTTGGAAAGCCCTGGGTTGTGCTGGAATGGATGACAACTATCCTATAAATTATGCACAGGTACTGGGAGTGTGTAACAGAGTGGTCTTAGCCAAATTACGCCTCTGTGTGTCCCAGCTTCCCCATCAGTAAAATTAGAGGTTTGAATTAGGTAACCTCTAAGGTCACTCCAGCTTGACAGTTCTGTTGTCTGTAAGGATACATTTCTTAGTGAATTGTTCCCTTTAAAATAGAAAAAAAAAGCCACCACACACACACAAAAAAAGCAAGGGGTCGGCAGGTCGGGGGGGCAGATTCTACTTTTCAGTGCTGAGTTGTCTTGGTCAGTGTCAAGGAGGCAGCACCCAGACACCCACATCTCAGGATGGAATCAGGGCTGGGCTCTAGGGTGGAAAAGGCTCCATCATCTGTGACCAGGGGTGTGTTACCTGAGTGGAGGCCATGGACAGCCGTCGTACGGAATGAGAGAACCTTTGATAAAAGGGGGTAGATCTTAACTGATCTCCATTAAGAGATCAGTTGTGACCGACTGGATGTCGTGAGGAAGGAAAAAGTGCCCGACAGCGAGTGAGAGACAGAACAGCTGCGCTGTGCGGTCAGCCCCTGGTCCCCTGTGCTATTTCTCCGTCAGGGTTTCTAAACAGTAACTTTTATTTGGCTATTTTTTGGCCGCACCAGGTCCTTGTTGCCGCGCCCCGGCTTTCTCTAGTTGCCGTGCACGGGCTTCTCACCGTGGTGACATCTCTCGTTGGGGAGCATGGGCTCCAGAGTGCTCGGGCTTCAGTAGTTGTGACTCTTGGGCTCTGGAGCGCAGGCTCAGTAGTTGTGGCCCACGGGCTTAGGTGCCCCGTGGCATGTGGGTTCTTGGTTCCCAGACCAGCGATCGGACCCGTGTCCCCCACACTGACAGGCAGATTCTTAACCGCTGGACCATCGGGGATGTCCCTGGTACAGGATTTATGACAGGGTGACATTGGGTTTCAGTCTCTGTCTCATTCATTGATAACAGAGAGACCGTGCTGCCTGGAGGAACAGACACAGGTTTTGGATACCGATCTCAATCGCTTCTTGGCCTTTTGGCTGAGGTCAAGTGGATACCGATCTCAGCACCACCTCTTTTGTGACCTACGGCAGAAGACTAACCTCTGCAGTCTCTGTTGTCTCACCAGTAAAATAAACGGCAGCAATCCTTACCTCATGGATCTGAAGATTAAATGAGAAGCGGTTTGTCCAGCCTCCTAAAGTAATAGGTGGGCGAGAAATTATCAGTATTGTCCACGTGCTAGAAATGGATGGGGAGCTTTCCTGGGGATTAAGCTGGGAAAGGCATCTTTCCTAGAGGCGGTGATGGGTGACACTCTCTGAACTGGCAAGGACAGATGTTTCTGGGGGTGATGGTAACATAGCCTTGTATCCAGAGGACTTAGTCTACATGGGGCATACCTGGAGAGAACGCTGCATGTATCTAATGCAGGTAGATTCCAGGTTTTCTCTTTGGCTCTTTCTCCCTCTTTTCAGTTTTCCTGTCTTACATGTTGGTGAGAAACTCTGTGTAGACACCTTGTGGACACGGCTGCCCAAAGCATTTCTGCTGCGTCCCAGGGAGCCTGTTCTTCCTTTCTTCCCGTTAAAACAAACGTAAAACCAAAAGCAGCAAACAGATAAACAAAAAACTTTTTTCTTCATCACAATCCCTATTCCCTCATATGTCTTATCTCAGCTTAGTGTTAGGAGCACGGCTATTGGATTAAAATAATTCACGCTGGACGGATTAAGGAGGGTTTTTAAAAGTCCAAATAACTTTCAAACTTGTGAAATTTTAGGTGGCACTATTATGAGTAATTTGAGGGATGACCTAGGTATCTTTGGGGGGAAATTATTTTGGATGGGAGAGGTGTGGGAGAGAGGCAGGAGGCTTCCTTTTCCTGGAGTCATGTGATTCCTGTCACTTCTAGTTACAGCGGTGTCTGTAATCAGAACTCTTTGGGTTGCTTGGCACAACTGTTGCTCAGTTATGTCCAATTCGTTGCGACCCCACAGAGTGCAGCACGCCAGGCTTTCCTGTCCTTCACTGTCTCCCAGAGTTTGCTCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTAGCCCCCTTCTCCTCCTCCCCTCATTCTTTCCTAGCATCAGGGTCTTTTCCAATGAGTTAGCTCTTTTCATCAGGTTGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTCCCAGTGAATATTCGGGACATTTCCCTAATTAAACTAAAATGGATATTTATTGATTCATGTGGATCCAAAAATGCAAGCCATGTTGTTGGGTCTTTCTGTCTTGCTCTTGGTCTGGCTCCTCTCTCTGCCTCCACCTCCTTTTCTCCTGGTGAGTGAGAAGGGAGGGCACAAGCTTAAGCCGCCCTCAATTCTTATCATCCCAGGCCGGGACCCCAGTGGAGCACAGCACGTGTGAAGTCCTAAGAAGACCGACTCACTAGCTTGAGTCAAGGCCCCAGGAGATGGGAATGTGTGGATAGACCAGCTCTAGGTCACTGTCCTTGTGATTGTGAAGGTGGGGAAATGTGACTGACATCCCCACTCCCCTGGGCAGTTGATGGAGAACAACGGCCAAAGAAGGAGGTGCCATGAGTGAACAGGAGGCGCAAGGGGAAAGGAAGGAAAGAATGTTCCTTGAACTCCCTTTCGGTATCAGGGAAGAAAGCCACAGTGAAAGTCCGACGTGCCACAGCTGAGACCCAAGGCAACCAAATGAATAAATAAATATTTGGGGAGAGAAAAACTGTTTCCATCAGTGGGCAGTATTGTTCTTTAAGTGAGAAAATACACTTTTAAATAAAAGAAATAGTGACTGGTAAGGTGATCTCATACAAACCAGTAATAATGGAAAAAGCAAACAGGAGAAAGATCAGGTGGGAATTTTGTCTTGGGAATGAAGAGGAAATGGCCTGTTACAGGACAAAGGTGAGATTCGGGGATTGAGGCCTCTCCTGCAGCGATTTTAAGGATCATCTCCGAGAATGTTAAGGGAAGGTGTTGAGGATGAGGTGATAAGTGGTCCTGATAAGGACCAGGTCTAAACCTAAGCTGGCTTTGATAGGAAAGCTGTTGATCTGATGAAGCATCTGGGGAGGACTTCTCCAAGTGGAGGGAGGAAGACAGTTTACTGGGAAGAGTAGGAAGAGCTGATTGGAGACTTAGGAGAGCAGGGTTCTGGACCAACTCTGTCCCTAGTGGTGTGACTGGGAAATCATTTAATCTTTTTGAAATTCAGTTTTGTTTCTCCACCTGAGAATAAGGTGCCTAACCTCCCATTACTACCACTGCTAGGTCAGCTCTACTTCAGTGAGTTGCCTGAAGATGACAGTACTAAGTGTGAAATTGCTTGGGAAGGTTAAAGGTCATGCAAGGGTGCTCTTGGCAATGACCACATTCAGTTCAGTTCAGTTGCTCAGTCGTGTCTGAATCTTTGTGATCCCACAGAGTGCAGCACACCAGGCTTCCCTGTCCATCACCAACTCTCGGAGCTTACACATGTCCATCGTGTCAGTGATGCCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTCTTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTGGCATTAGCATGCCCTGAAAGGAGCTCCAAGCTTGGGGTGGGCAGGTGGTGGTGGGGGAGTCTCTGTGACCTTGTCAGGAAGGTGGGAGGGGCTCTGGACCGAAGTGACACAGACGAAGTTCTCATGTGGATTTGGAGTAAAGAATGCTGAAGAGTCACGGGGAGAGTGGAGAGAGAGGAAGTGAATATTCGTTATTTTACCTAAAAGTATAGCAAGGAGTAGCAGCATAGCAGGGCATGAAATTAGTGAGGACGAATGAAAGACACACTGAAAGCAAGTCAGTTGCCATGAAGGGTGGGAGAAGGTACCGTCTCCAAAAAGAGAAATAATTACAAACTGGGTGTGATGGTAAAATGAAGGTGGCGCACACGTGCCTCTTTTTGGGGAGATGACCTGGATTTTTCCCACCTTTTGACCCCACCCTTCTGGAAGCTGGGTATAGTTGTCCAGAGAGGGGTTTGGGGCATGTGAGGGTTGTTGTTTAGTCGATAAGTCATGTCCAACTCTGTGACTCCAGTGACTGTAGCCTGCCAGGCTCTTCTGTTGATGGGATTCTCCAGGCAAGAATACTGGAGTGGATTGCCATGCCCTCCTCCAGGGGATCTTCCCGAGTCAGGGATCAAACCTGCATCTCCTGCATTAGCAGGCGGATTCTTCACCGCTGAGCTACCAGGGGAGACCTGCCTGTGAAGGTCGTTGTTCTTTAAATGGAGGGAAGAGAAGCCAGAACTGAGTGTAGTGGGGGGGAGGCTTCTCAGCAAATAATAATGACTTGGTTATATGTCAGCTGGACCAGAGCAGGCCGGGTGAGGGCTGGACGGTGCAGAAGCTCTGTGAGTTCCCATGGCTGGGGGTCTAAGGTGGTTCTGCATCCTGGGGGCTCTTCTGCCTCATGACCCAGGCCTGTCATCCTCGCTGACCTTGGCGGCCATAGACTCCTGTCTAGGTGGTATGAGCCTGGTGGTATTTGTTCTTCCTACTGGAGAACACCTACCACGGGGTCTCTGGCCCCAAGTTAGGGCTTCTTGTCCTCTCCCAAGGAAGATTCGTTGCAAGGGCGCCCCTGAAGCCTGTGTGCTGCTCTCTGCAGAGGGACAATGCCCCTGAAGTGGACCCTACAAGTAATCATGGTTCAAACCATGTGATTTCTGCTTTTCAGGACAATAGCATCTAGGAGGACTTGATGTTTCCTAATAACAAGCTGCCCCACTGCCATTTCCCCTGGATAGATAAACAAAGGCTGCCCACAGGGAACAAGCTGGAAACTGTACTCATTTTTAAAATTTTTATTTTATATTGGGTATAGTTGATTTACAATGTTGTGTTAGTTTCAGGTAAACAGCAAAGTGATTTAGTTATCCATTCAGTTCAGTCGCTCAGTCATGTCAGACTCTTTGTAACTCCATGGACTGCAGCACGCCAGGCTTCCCTGTCGTGCACTATCTCCCAGAGCTTGCTCAGACTCATATCCATTGAGTCGGTGATTTCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCACATCAGGTGGTCAAAGTATTGGAGCTTCAGCATCAGTCTGTCCAATGAATATTCAGGACTGATTTCCTTTAGGATTGATTGGTTTGATCTCTTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTTAAAAGCATCAATTCTTTGGCACTCAGCTTTCTTTATAGTCCAACTTTCACATCCATACATGACTACTGGAAAAACCACAGCTTTGACTAGGTGGACATTTGTCGGCAAAGTAATATCTCTGCTTTTTAATAAGCTACATAGGTTGGTCATAGCTTTTCTTCCAAGGAGCAAGCATCTTTTAATTTCATGGCTTAGGTCACCATCTGCAGTGATTTTGGAGCCCAAGAAAATAAAGTCTCTCACTGTTTCCATTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACTAGATGCCGTGATCTTAGTTTTCTGAATGTTGAGTTTTAAGCCAACTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTTGCTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGTTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCTGGCATTTCTCATGATGTACTCTGCATGTAAGTTAAGTAAGCAGGGTGACAGTATACAGCCTGATGTACTCCTTTCCCGATTTGGAACCAGTCTGTTTTTCCATGTCCAGTTCCATGTCCAAGTTTAATTATACATATACATAAATTTTCTTCCCTGCTGGCTCAGCTGGTAAAGAATCTGCCTGACCTGGGTTCGATCCCTGGGTTTGGAAGATCCCCTGGAGAGGTGCTACCCACTCCCGTATTCTGGCCTAGAGAATTCCATGGACTGTACAGTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGATTTTCACTTCAGTTCACGTACGTAAATCTATTCTTCTAAAGATTCTTTTCTCATATAGGTAATTAGAGTATTGAGTAGAGGTCCCTGTGCTATGCAGTAGGTCTTTATTGATTATCTATTTTACATATAGGTCAATGTTCTCTTATATAACCAGTAATGTCACTTTTAATCACAAAGGACAGAGCTTCTCTGTTTGGCCACCCTACCTAGCACAGCCAGATTGTTCCCAATGAAACACTTTTCCTTCTGCCCCAAATTTTCTCACCAAGATCATTATTTCCCATGGAAAATTTTTCACGATGTTTTATTGATCAAATTTTTTGGTTCACATCAGCCAGCTATACAGCATCTGCAGTTAGAAATTTACTTTCATGGACAGTTTATCCACCAGGTTCAATTATTCTCAATCAAATTTTGCAAATAGAAATTTTATCAACAAGATGTGCTTCTTTTCAGGTTTTAGTCAAAACCATTTTTCTATGTGCAATTTTTGTTTTGAGTGTGCTTGCTATTTGGTACGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACCGAGGAGCCTGGTAGGGTGTAGTCCATGGGGTCTCGAAGAGTCGGACACGACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACAACTGAAGCGACTTAGCAGTAGCAGCTATTTGGTATGTATTATGAATTCAATAAAAGAGTTTGCATTAATTTTTTAGCTAACTCATGAGAAACTAGTAAGGCTGTTTCGGGATTGCTGTGTTGTAAAGGACCGGACTGCTCTGTTGCTCAGCCAGTCCTTCAGAATACGTTTCGGTCACTTTGGGTCTTGAGTTCTAAAGTGCTCCCAGCGCTGGTGGAGCAAAGAGCAAATGGCTGGGCTCCAAATCCATCAGGGTTTAGAGTGTAGCATCTGTTGGGTTTTTGTTTTTTTGGAAGGCTTTTTACTCTCTCCCCCTGCAACTCCCCGATTTTTTTTTTTTTTTTCTATTTTCTCCCTAAACTTTTCAGCCCTTTCAGTTTCTCTGACTGATCATCTGATTCTTCTGCCCCTGGTTGCCTGCCCCGCCTCCCCCAGCCTCACTCACTGTCCCTGACCCTTTCCTCTGAGAGCTAGCAGTATTTTCCCTTCTCTGTTGCTTTCTTCTATTTCCCTGCCATCTCCTTCCAAGAGTTGCTTATCAGACCCCTCAATGTCATGATTATAAAGGCTCAGAAGAAAAACTCTTCCCCTCCCCCAACCCCTCACCACGCAGAATCCCGCCGGGATCAAGTAACCAAGAGAGGTTGTGAACCTGTGCTTCCTGTATGGCTTTAAAAGCAGCGCTGGGGGTGGCCTGCTCGTGTGGGCTCGACTTTCACGGAATCTGTGTGAAGACAGAGCGATGGATGATGTGATCTCAGGAGGGCCCTGCCAGATCGGGAACCTGGGAACCTCATCTCAGTCATCATCAATTTAGATTTATTGGACACCCCCTGGGTGCTTAGAGCTGTGCTAAATGATTTCATCCTTCAAGCCCTGAATCCTAGTTTCTGCCTTTTTGTAGCAGCTGGTTAAAGTAGTGTAGTACTGGGCTGGGTTTTAACAAGCTTTTTTTTTTCTGTTGTTGTTTACTGCAAGCCATGTTTTAAAAATTAGAAATTAAAAGTTAGAGGATTTAGTAATGATGTTTGGGGTTGCCCTTGATTTCCTTTAGCATAAGATCCTGTCGTTCCCACCCCACACAAATTCTCTCCAGCGACTCTCAGATCAGAGGACCTAGGGCTTCCCTTGTGGCTCAGCTGGTAAAGAATCTGCCTGCAGTGTGGGAGATGTGGGTTCGATCACTGGGTTGGAAAGATCCCCTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCATGGACTGTATAGTCCATGGGGTCGCAAAGAGTCAGACACAACTGAGTGACTTTCACTTTTCACTTTCACTGGAAAGTGGGGAGAATATTTATGGAGAGGATGTCTTATGTCTGGAGCTGGGCTGGAGAAACAGGGTTGTAGGGAATATTTTAGGGGAGGCTTGAGAAAGGAGGGACAGAGAGGGAGAGTCAGAAAGTGCTCCGGAGTAGTTTCTTTCTTTCAGTCAACAAATACTTATCCAGGACTTCCCTGGTGGTCCCATTGCAGAGGGCCTGGGTTTGATCCCTAGTCAGGGAACTAGATCCCTCATGTCACAACTAATTCCTGATGCAGCCAAATAAAAATACATTTAAAAAGGAGGTATTTTCTCAGTGCCTGCTCTGTGCAGGTAACTTTCTAGATGCTGAGAATATAGCAGTGAAATATATATATAATATATAAATCTCTACCTTCCTGGAAAGTGAAAGAAAGTGAAAGTCACTCAATCGTGTCCAACTCTCTGCAACCCCATGGACTATTCTCCAGGCCAGAATACTGGAGTGGGTAGCCTTTCCCTTCTCCAGGGGATCTTCCCACCACAGATCGAACCCAGGGCTCCCTCATTGCAGGCAGATTCTTTCCCAGCTGAGCCACCAGGGAAGCCCAAGAATACTGGAGTGGGTAGCCTATCCGTTCTCCAGGGGATCTTCCCGACCCAGCAATCGAACCGGGGTCTCCTGCGTTGCAGGCGGATTCTTTACCAGCTGACCTACTAGGGAAGCCCACCTTCATGGAACTTAACGTTTTAGTAGGAAGAGACAGCCAATAAAACAGAGTTCATTTTGCAGTGGCCATGGCCCCTGAGGCCCTGCGCCCAGGGAGGGCTCCCACACTCCCAGGGAACGTCAAGGCAACCTCCACATGGCTGTTCCGTCACATTTGCTCTGCAGGAGAGAGCTTGTGAGCCTAGGTCTGTCTGCACCGTGCTCGGATCCTGCGGGGAGAACACCCTGGGCACCTACCTGGATCCCAGGCCTAGGGGCCAAAATGGCATTTTTCTCCCGGGGAGCCCTAACGTGGGGCAGCCCAGCAACTGCTTGCAAAGGCATCCCGTTGCTATTTGCTTCCTTCTGCCAGGGCTAGCTTTGCTCCCCGCTTGGGCATTTGGCAAGCCAGGGGCCGGCCCGCCACTCCTCGCTGGGGGCCTACGGGAGGTGCCAGGTGCCCTCGAGCCAGGTGACCCCGGCACGGCACCCGGGCCCATCAGACACACTCCCACAGCCTCCTTCCCCATGGGCAGGACTGCGCTGACCTAGGAATGTGTTTGCAAGGCTCGCAGAGTGCCGGCTGACACTCGGGCCTGACTTGGGAATTGAGGCCCTGGGAGCAGGCCCAGAGGTCTGGTGTCTGAGGAGCCACATACTTGCTGCGCAATAAAGGCCTGAAAACCCAATAAAAATAAATGAACAAAGTTGGTTATGTATACCATAGCAACAAGTAAAGCAGAGAAGGGAGATGGGAAGCGTAGGGAGTTTTGATTTTAAAAAGGAAGATCGGGTAAGCTCTCATTGATAAAGACCTGAAGGAGATAGGGAATGAGCCAGTGCCAGAATCTAGGTGAAGAATCTAGTATTCCAAACAGAATAACCCATGGGAAGGGCAGGGGAAGGGGTGGGAGGGGCAGGGCAGGAGAAAACATTGATGAACTAGCAAGAGAGGAGAGTGACTCGGGCTAGTTGGACCCAGAGGAGGTGATGAGAAGTCAGTTGGGCTGCGGCTCTACTGAGATTTACTGGTGGGCTGGTCACAGGTGGTGGGAGTGAAGGTCTGGTCTGAATGATGGGGGTGGGTGGGGGGAGTTAGCACTACCTGAGATGGGAAGGGAGGGAGCTCAGACTGGGAGGAGCTGACTCTGGAGAAGGTCCAGGAGTCCAGTTTGGGGTTACACTTGCGTTCTGGGGAGGTGGGGATGGCCTGGGAAAGGGCCCCTAATGACATGAAAGGGGGACACAGGGATGTGAATCTTGCAGAAATTAAACCGATTTTGGATCAGGATGAGGGCAGGGAGAAAGCCCAGGGTGCTGGGAGGTGAGCCCCGAGAGGCAGGTCACGGGGTGGGGGTGGGGGGGTCGCGGCGCAGGTGGGTGAAGTTGGGTGGGCTGGCAGAGAACCAAGCCCACCTTCGAGGGGAGCAGTAAGGCCTGGGTGAGGCTGTCACGGGGTGTACCACGTGGGCTTTGAGATGGTGGATGACGGCAGGAAGCCCTCCAGGAAGAGACAGGGCCCGGGAATGACACCACCGGAGGAGGGGTGGAAACGTGCGCGGACTGGGATGGGGTGGGTGAGCTGGAAGAGGCTGTATCGTGGCCTCTAAGGAGAATGTAAACGCGGTTCCTGAGCAAAAGGAACAGGGGCGGACAGCATCCGTTCAGGACAGCTCTGGGGTGGGGAAAGGGAGAGGAAAGTGAGCGGGCTGGTGCGGGGCCCCGCGGGGAGCGTGGAGCTGCTCCAGCCTCGCGCATGCGTGCACGCACACGGCCCGTCTAGGAAGCATTTCGCGGGGTCACCTTCTCGACCTCGGAGTGTGCGTGCGACACATGTGGTGATGTGCACACATGCGCCTCCACCTGTACATCGCGAGCTCCTCTGGCCAGGGGCTGACTGTTCACTTGACGGGTTAATCTGTTTTCTTCTCGTTCTCCTTTCTACCGGTCGGTGTTCTTTTTGATTTTTTGTAGTTCCCCTGTTGATTGGTCCTTTGGGCAGAAAACAAGGGATTTTGTAAAACTCAAACACTAAAAAACACTTGTCATGCCTTATCTGCGGTTCCGATAAAAATGTCCCTATGATGCGACCAACAATGGAATTAAACTTTAGAATTATATATGGGTTAAAATGTTTATATGCCTGTGATTACAAATAACCAGCAGCCTACTGAGTCAGAATCTCTCTTTCCCCCTTTTCCTCTCTGTATTCCCTCCCCAGCTGCACTTCTATTTCTTCCTCCGCTTCCCGTGTTCCCTCCGGTTCTCAGCTGACACTGAGCTCAGGGTCCCCGGGATTCTGAACTTGGGCAGAAAGCAGCTGTTGATGCTTCTCACCGGCTTGGCTGGGACAGAGGGAAGGTGGAAAAGAGATGGCATCTTTTTTTTTTTTTTTTTGAGATGGCATCTTTTTAAAATGAAGGCTGCAAAGGGTCCTGGGGGAGCTGCGTGATTGGAAGAAAAACCTGGCCATCAAGAAGGTGGTGTGTGTGGTGGGAGGGCTCCCTGGTCTAGGCTGGATGGTCTGGTTACAGAGAATTGGTGAGGTGGGGGTACAGACACCTCCTGACTCTCAGGTCCTTGGGTAACACTTCCTAGATCCCAGTTTGGGGCAGGAGGGAATCACATGACCCCGAAGTTTCCATCTGGAAACAAGATGCCAAGATTCCCAGCTCCAGGAAAGAGGGAAGGAAGGGGGGCGGACCAGAGGGGCTCACGTGGCTCTTCCCATGAGGCCAAGTGAGGAGCCCAGGAGGAGAACAGAGGCGGCCTCCTCTCTGTCCTGCAAAAGTGAATCCTCCTGCATTCTCACTCCTGCCTGTAGTGACTGAAAGGATCCCGAGCCCGGCTCCAGCTGTTTCATCACCATGAGCAGCTGCAGGGTCTGGGCTTGGAGGGGCGGTCCGTGAGTGGGGAGCCCTTCACTGGGGTCTAGAGAGAGCCGGGGAGGTAGCAGGTAGGGAAATGAGGTTGAGCGGTGGGAGCCGAGGCATCCGGATCCTAGGAATGGGGCCCTCTTGATGGATGCCTCCCTCACATTGCCCGAGTGAAGTCTGTGCTGGTTAATACCTTTCTTCCCGTCTCTCTGTCTTCCCAAACCTCTTCCCACTCTGCCCTGCCTGTGTGCCTCCTGTCTCATCCCCTCCATGTCTGTCTCTCCTCCGGCTGGCACGCTGTCCACGCCTGGCCCCGGTTCCATGTGCCACCTCCAACCTGTCTGCCTTCTCCTCGCCTCCACCCCAACCCGATCCCACCCTGACCCCACCCCGTTGGCCCCCACTCCCCACAGCAGAGGGGAAGGTGTACAG
Seq C2 exon
CTCCGATGAGGAAAAGCTGGAGGCACCCGCAGGAGACCCAGCAGGCAGTGAGCAGGAGGAAGAGGGCTCGGGCGCGGACAGTGAGGATGACGCCTTTCTGGACAGTTCTGCCGGGGGCCCCGGGGCCCTCCTGGGACCTAAACCGAAGCTGAAGGGTGGCCTGGGGACCGCAGTGGAGGAGGGGGCACCCTCGACAGGAGTCCCGGCCCCTGGGGGCAAGAGCCGGAGGCGCCGCACGGCCTTCACCAGCGAGCAGCTCCTGGAGCTGGAGAAGGAGTTCCACTGCAAGAAGTACCTCTCGCTGACCGAGCGCTCCCAGATCGCGCACGCCCTCAAGCTCAGCGAGGTGCAGGTCAAGATCTGGTTTCAGAACCGGCGGGCCAAGTGGAAGCGCATCAAAGCTGGGAACGTGAGCAGCCGCTCTGGGGAGCCCGTGAGAAACCCCAAGATCGTGGTCCCCATACCCGTGCACGTCAACAGGTTTGCCGTGAGGAGCCAGCACCAACAGATGGAGCAGGGGGCCAGGCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011120:ENSBTAT00000014768:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=32.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]