HsaEX1015817 @ hg38
Exon Skipping
Gene
ENSG00000155265 | GOLGA7B
Description
golgin A7 family member B [Source:HGNC Symbol;Acc:HGNC:31668]
Coordinates
chr10:97866187-97871580:+
Coord C1 exon
chr10:97866187-97866375
Coord A exon
chr10:97866866-97866951
Coord C2 exon
chr10:97871066-97871580
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTGTTCCCCTTGGCTGCCAGGCC
3' ss Score
7.43
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGCCCCGGCCTGTCTATGATCCTGCCTCCACCAAATTCAAGGTGTGGGGAGACGGGTGCCGTGGTTGGGAGCTGTTCAGCGCACTCCTGACCTCTTCTAGACCTATGGCTTTCCTGTCCTGCATTCAGAGCTAGAGGCCAGCTCGGCCTTGCGAGAAGCATCCAACTTTGAGACTTTGCAGGCTGCCAG
Seq A exon
GCCAACGACTGCTTCTCTGCATCCTGCTGTCTTCGCTACCTGAGGGTCTGTGACTTCTTCCCTGTGTGGGTCCAGCCTGACCCCCT
Seq C2 exon
AGCCCAGCCTTCGGAGGTTTCCGCATGAGCCTTCTCGGGCGACTTCTAGGAGGATTTATTCCCCTGGCAGTGCCAAGGGCAGCCTGCACCAAGCTCACAACTCTTCCTCCAAGAGGATGTTCAAAGGGCCTGTCATTTCAGCATCTGCTGGACAGCAGAACTTCGCATGCAGGATCCTGGAGCTGCGTCGGGTTTTGAATCAGGGACAATGGAGGAAGTGGGAAACTGTGAAGAGAGTCAGAGGGCTGTGCCAGCTGCCCCCTTTCCCACCCCCAGCAATTCACTTAACTTTCCTGAGTCTCACCTTTGTCATTATGAGAATGTGTATATTTATAAATAATCATCTGTTTCTCCAATGTAAGATATTGTTATTGCAGAAGTGATACTAGGACCTCGTTATACGATGGCCTCATGATGTAGATTTATAGCAGGCTTCAGATTCTGGCATAGAATAAACAGATATTTATCCAAGGGTTCACTGATTCCCGAATAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155265_MULTIEX2-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTCCTGCATTCAGAGCT
R:
AGAGTTGTGAGCTTGGTGCAG
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains