HsaEX1015818 @ hg38
Exon Skipping
Gene
ENSG00000155265 | GOLGA7B
Description
golgin A7 family member B [Source:HGNC Symbol;Acc:HGNC:31668]
Coordinates
chr10:97866187-97871580:+
Coord C1 exon
chr10:97866187-97866375
Coord A exon
chr10:97867361-97867538
Coord C2 exon
chr10:97871066-97871580
Length
178 bp
Sequences
Splice sites
3' ss Seq
AAGGGGGCTGCCTATCTCAGTTG
3' ss Score
2.03
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGCCCCGGCCTGTCTATGATCCTGCCTCCACCAAATTCAAGGTGTGGGGAGACGGGTGCCGTGGTTGGGAGCTGTTCAGCGCACTCCTGACCTCTTCTAGACCTATGGCTTTCCTGTCCTGCATTCAGAGCTAGAGGCCAGCTCGGCCTTGCGAGAAGCATCCAACTTTGAGACTTTGCAGGCTGCCAG
Seq A exon
TTGGCGGGAGGTGTTAGAAGTGGATGTGCAAGACCAGCCACTGGAGGTAGCTCTCTGGAGTCAAAGAGAGGCCTGCTTTTCTACCAGACATGGGAGCAGCATGTAGGATACAAGGGCCTACCCAGAGACCAGAGAGAGTCAGCCTAGTCCTTGCAGCCTCAGGAAGTCCTCGGCCCAA
Seq C2 exon
AGCCCAGCCTTCGGAGGTTTCCGCATGAGCCTTCTCGGGCGACTTCTAGGAGGATTTATTCCCCTGGCAGTGCCAAGGGCAGCCTGCACCAAGCTCACAACTCTTCCTCCAAGAGGATGTTCAAAGGGCCTGTCATTTCAGCATCTGCTGGACAGCAGAACTTCGCATGCAGGATCCTGGAGCTGCGTCGGGTTTTGAATCAGGGACAATGGAGGAAGTGGGAAACTGTGAAGAGAGTCAGAGGGCTGTGCCAGCTGCCCCCTTTCCCACCCCCAGCAATTCACTTAACTTTCCTGAGTCTCACCTTTGTCATTATGAGAATGTGTATATTTATAAATAATCATCTGTTTCTCCAATGTAAGATATTGTTATTGCAGAAGTGATACTAGGACCTCGTTATACGATGGCCTCATGATGTAGATTTATAGCAGGCTTCAGATTCTGGCATAGAATAAACAGATATTTATCCAAGGGTTCACTGATTCCCGAATAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155265_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTCCTGTCCTGCATTCA
R:
ATGCGAAGTTCTGCTGTCCAG
Band lengths:
251-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains