HsaEX1015823 @ hg38
Exon Skipping
Gene
ENSG00000175265 | GOLGA8A
Description
golgin A8 family member A [Source:HGNC Symbol;Acc:HGNC:31972]
Coordinates
chr15:34407524-34437466:-
Coord C1 exon
chr15:34437398-34437466
Coord A exon
chr15:34435383-34435471
Coord C2 exon
chr15:34407524-34407735
Length
89 bp
Sequences
Splice sites
3' ss Seq
AAAAAAAAAATGTTTTACAGGAA
3' ss Score
5.61
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGCGGCGCGGCGAGGACGGCGGCGCGGCGAGGACGGCGGCGGACCGGGGCAGCCCCGCGCCCTGGCCAG
Seq A exon
GAATAATCGGTGGAGATGGATTGTGAAATGGAGGTGCATAAATATCCAGTTTGCCAACCGAGCTAAGAAATGCTGGATAAAAGTAAAAG
Seq C2 exon
CTCTACTGAGATGAAGAAAGAAAAAGAATACCTGCTCAGCTCCAGAGACACGTAAAGGGACAGAGATTGGGGGACAGAAGGAAGTGCATTAATTCCTTCCACGACCCCTGAAGAGCAGCGGTGGGTCTGAGCATCCTATCTCCAGGAAGCAGGCCAGCAGGCAAGCCAGCTGCCACCTCGTCCTGTGCAAAGCACAGGCACCGTCCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175265_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains