HsaEX1015824 @ hg38
Exon Skipping
Gene
ENSG00000175265 | GOLGA8A
Description
golgin A8 family member A [Source:HGNC Symbol;Acc:HGNC:31972]
Coordinates
chr15:34407524-34435471:-
Coord C1 exon
chr15:34435383-34435471
Coord A exon
chr15:34428615-34428704
Coord C2 exon
chr15:34407524-34407735
Length
90 bp
Sequences
Splice sites
3' ss Seq
GGGCCCTCTTCCCCTTTCAGGTG
3' ss Score
12.1
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GAATAATCGGTGGAGATGGATTGTGAAATGGAGGTGCATAAATATCCAGTTTGCCAACCGAGCTAAGAAATGCTGGATAAAAGTAAAAG
Seq A exon
GTGGAGGGAGCTGTTCATCCTCTGGGGGCTGCTGGGCAAGAAACATTTCTTACGTGATAATGTGAAGCGTCAGAGGTCCCTGTTTGATAG
Seq C2 exon
CTCTACTGAGATGAAGAAAGAAAAAGAATACCTGCTCAGCTCCAGAGACACGTAAAGGGACAGAGATTGGGGGACAGAAGGAAGTGCATTAATTCCTTCCACGACCCCTGAAGAGCAGCGGTGGGTCTGAGCATCCTATCTCCAGGAAGCAGGCCAGCAGGCAAGCCAGCTGCCACCTCGTCCTGTGCAAAGCACAGGCACCGTCCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175265_MULTIEX1-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTTGCCAACCGAGCTAA
R:
ATAGGATGCTCAGACCCACCG
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains