HsaEX1016270 @ hg38
Exon Skipping
Gene
ENSG00000148180 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:HGNC:4620]
Coordinates
chr9:121265154-121283392:+
Coord C1 exon
chr9:121265154-121265297
Coord A exon
chr9:121265661-121265754
Coord C2 exon
chr9:121283319-121283392
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGGCCTTCATTTCTCCCCAGCCT
3' ss Score
6.98
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGACAAACTACAAGGCATTCGATGCTCAACAAATACTTGTGCTGATAACTTCTCTTTCTGAAGCCAGCTCCAGGAGAGGTCTGTAATCAGAAGAGCCCCTGAACCCTGAAGCCTCCTGGGCTGCCCAGCCCAGGCATCTCCTCT
Seq A exon
CCTCACTCTGGGAAGGAGGTGGTCTTCTGGCAAAAGAAGATATCAAAGTTCTTCCATCAGAGGAGATCCTTATCAGCAAGACATTCACTCTGAG
Seq C2 exon
ACGGAGTCTTGCTGTGGTGCCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCTCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148180_MULTIEX1-3/11=2-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTCTGAAGCCAGCTCCA
R:
CTGGGAGGAGGAGGTTGCAG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains