HsaEX6062863 @ hg38
Exon Skipping
Gene
ENSG00000148180 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:HGNC:4620]
Coordinates
chr9:121231165-121283392:+
Coord C1 exon
chr9:121231165-121231303
Coord A exon
chr9:121248276-121248323
Coord C2 exon
chr9:121283319-121283392
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGCAACCTCTGCCTCCCAGGTT
3' ss Score
6.14
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTCACACTGTTTAGAAGGAGAAAGAAGAGCTCGCTGTGAAAAACGCTCCACAATGCTGCAGAGCCTTGTGAAGGTGGAAGAGTACTCTCATCAGCAAACGGCATTCCTTCCATGGAAAATGTCATTGGGAGGAAAGCAG
Seq A exon
GTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG
Seq C2 exon
ACGGAGTCTTGCTGTGGTGCCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCTCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148180_MULTIEX1-1/11=C1-7
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGCAGAGCCTTGTGAA
R:
TTGCAGTGAGCTGAGATCGTG
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains