HsaEX6062863 @ hg19
Exon Skipping
Gene
ENSG00000148180 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:4620]
Coordinates
chr9:123993443-124064445:+
Coord C1 exon
chr9:123993443-123993581
Coord A exon
chr9:124010554-124010601
Coord C2 exon
chr9:124064239-124064445
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGCAACCTCTGCCTCCCAGGTT
3' ss Score
6.14
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTCACACTGTTTAGAAGGAGAAAGAAGAGCTCGCTGTGAAAAACGCTCCACAATGCTGCAGAGCCTTGTGAAGGTGGAAGAGTACTCTCATCAGCAAACGGCATTCCTTCCATGGAAAATGTCATTGGGAGGAAAGCAG
Seq A exon
GTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG
Seq C2 exon
AGCCCAACAGCATGGTGGTGGAACACCCCGAGTTCCTCAAGGCAGGGAAGGAGCCTGGCCTGCAGATCTGGCGTGTGGAGAAGTTCGATCTGGTGCCCGTGCCCACCAACCTTTATGGAGACTTCTTCACGGGCGACGCCTACGTCATCCTGAAGACAGTGCAGCTGAGGAACGGAAATCTGCAGTATGACCTCCACTACTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148180-'4-27,'4-4,5-27=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.004
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0062617=Gelsolin=PU(50.0=63.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACGGCATTCCTTCCATG
R:
GGCACCAGATCGAACTTCTCC
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)