HsaEX1016272 @ hg38
Exon Skipping
Gene
ENSG00000148180 | GSN
Description
gelsolin [Source:HGNC Symbol;Acc:HGNC:4620]
Coordinates
chr9:121268060-121302167:+
Coord C1 exon
chr9:121268060-121268219
Coord A exon
chr9:121281470-121281562
Coord C2 exon
chr9:121301963-121302167
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCCCTTTGTTTACAGGTA
3' ss Score
11.7
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
CTCCCCCACCCGCCTGCCCGGCCGCCCCGCCCCGAGGGCGGCTCCCGCCCGCGCCCTGCCCACCCCGGCCGCGCGCACCACAACGCCCCCGCCCCGCCGCCCGGAACCAGCTGAGCGCAGCTGGACCCAGCAGCCGCTGTCTCCAGTGCCGCAGCAGCAG
Seq A exon
GTAGTGCTCATAGCTCTCTTTGTCCAGTGCTTCGGCCTTGGTCCCAGCGCCTTCCCACGGAGCAGCACTCTTCACCCTGCACAGCCTTGTTAG
Seq C2 exon
CCCAACAGCATGGTGGTGGAACACCCCGAGTTCCTCAAGGCAGGGAAGGAGCCTGGCCTGCAGATCTGGCGTGTGGAGAAGTTCGATCTGGTGCCCGTGCCCACCAACCTTTATGGAGACTTCTTCACGGGCGACGCCTACGTCATCCTGAAGACAGTGCAGCTGAGGAACGGAAATCTGCAGTATGACCTCCACTACTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148180_MULTIEX1-5/11=4-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0062617=Gelsolin=PU(50.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAGCTGAGCGCAG
R:
TCCATAAAGGTTGGTGGGCAC
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains