HsaEX1016676 @ hg38
Exon Skipping
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr17:67243784-67245989:-
Coord C1 exon
chr17:67245815-67245989
Coord A exon
chr17:67245148-67245179
Coord C2 exon
chr17:67243784-67243839
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTTGTGGGGACGTTGACAAGTGG
3' ss Score
-4.45
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCAGCCGGCGCCCCGGATTACCTGCCCCGGAGTCACAGTCCGCAGCCCGGACGCTCCCAGGGTGGCTCCGCGGAGCCTGGAGCCACATTCCTAGGGGAGGGGTCCCCACCTAGAGGGTCGCGGATCACGTTACCCGCCCGGAGGAGGAGACCGCGGGACACAGAGTAAACAAGGG
Seq A exon
TGGATCCAAGATGGCGTAGAAAGTAATGACAG
Seq C2 exon
GATTTGGATGAAGTAATGGATCACTAATGAACTACAGTGCTGGTGAGATGTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGAGGGTCGCGGATCAC
R:
ACACATCTCACCAGCACTGTA
Band lengths:
120-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains