HsaINT1034345 @ hg38
Intron Retention
Gene
ENSG00000266473 | RP11-401F2.3
Description
NA
Coordinates
chr17:67244837-67245806:+
Coord C1 exon
chr17:67244837-67245208
Coord A exon
chr17:67245209-67245489
Coord C2 exon
chr17:67245490-67245806
Length
281 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CCGCGTTCCTGCCCGGGCAGACG
3' ss Score
6.14
Exon sequences
Seq C1 exon
ACCTCCCGCAGGCTCCCGGGCCAGGCGTGCAAGGCCCCCTCTCCTGCCAGGGCCCAGGACGCTGCGGGCCCCAGCGGAGGGGAAGGGGACTAAGTAGGGGAAGAAGCTGTAAACAGCCCCAGCGTCCGGGCCTCGCCTCGAAGAGCCGCGCTTCCCAGGCCCAGCCGCGGGCCGCCCAGGCCCCCAGCCTGCCCCGGGGCCGCCGCGCCCGGGGTCCGGGACACCGGAGGGGAGTCGGGTCCCCTCCCCGGAGAGCTCCGGGAGCTCGCGGAGCGGCCCCAGGAGCAGAGAAGGGGGAAGTCAGGACTTACCTGTCATTACTTTCTACGCCATCTTGGATCCACTTGTCAACGTCCCCACAAAGCATTATGG
Seq A exon
GTAAGAAAGAGCCTTTAAAGTGACTCCCCCCGGCCCCCGACTCCCGCCTCCCGCCGCCGGCGCCGCCCCCTCCGGCCGCGCCTCCCGCCCGGAAAGTTGCCCCGGGTGGACTGCCGACCCCGGCGCCCGCAGCTGGCCCCTTCCCCTCCCCCGGGCTGACGGCATTGAAAATTCACCCGCATTTTTAAAACGTGGCTTTGGGGTTTTCTCCCTTTCTCCTGCCCCGGCCTCCCTGCCCCCACGCCCGGTCCTCTCGCCTCGCCGCGTTCCTGCCCGGGCAG
Seq C2 exon
ACGCCCCGCGTCTGCATTGAATCAACCCGAGGTTTCCTTGCCGCCCGCGGCGCGGCGCGGAGCTGCTCGCGGATTTATTTGTGCGCGTGGATGTGAGCGTTTCTGCTCCTGCGGCCGCGCTTCCAGGAAGCCCGCGAGCGGCCGGGGTCGCCTTCAGAGGCCGCGCAGACCAGCTCCGCACCCGCCGCCCGGAGAGGTGCCTCTGCCCTGGGAAACCGCCCCGGGGCCGTTGGGCTCCGGGAACTGGGAGGACGCCGTGTCCCCGAGTCCACCAGCGTCGAAGCACGATTTAAAAAAAAAAATTGAGCCAAATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000266473:ENST00000585193:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAAACAGCCCCAGCGTC
R:
GCAAGGAAACCTCGGGTTGAT
Band lengths:
307-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains