HsaEX1016876 @ hg38
Exon Skipping
Gene
ENSG00000156510 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr10:69233014-69238083:+
Coord C1 exon
chr10:69233014-69233133
Coord A exon
chr10:69237357-69237453
Coord C2 exon
chr10:69237655-69238083
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATGGTAATACTTTTTTCAAGGTT
3' ss Score
5.13
5' ss Seq
ATTGTGGGT
5' ss Score
0.62
Exon sequences
Seq C1 exon
CTGTTTGAATATGTAGCTGACTGTCTGGCAGATTTCATGAAGACCAAAGATTTAAAGCATAAGAAATTGCCCCTTGGCCTAACTTTTTCTTTCCCCTGTCGACAGACTAAACTGGAAGAG
Seq A exon
GTTTAAAAAAAGAGAGAGAGAAGGAATGGAAAAGTTTAAAGAAGAAAATAGAAATCACCACTCATCTCAATATTCAAATATTCCCACCACTAGAATT
Seq C2 exon
GGATTTTTGAAGAAAGCCAGCCTGTGCATCTCTCCCCGCTCTGTCCCTGGAGACAGGGATGTTGTCATAGCCTATGAGAGCAGAAGTTAGGGAGAGCTGCCACACGGCGGCGCTGTGGTGCAGGAAAAAAGCCCGAGGGCTGGTCCAGAGTCAGAGACCTGCATTCGGCTTGGGCTCTATCCTTCACTCGCGGTGAAATTCAGAGCAATTTCCTCCCTCTCTCAATCCCAGCGTTTTTAAATCCATAAATTGAGGGAAATGGAGGAGGTGCGGTCAGGAAGTTTGTGAGCCTGGGTCAGCTGCTCTTGACTGAGACGACTTGGGCGATTCTCTTTTAACTTCCAAGTTCTCTTCCAGTCTGAAACATTCTATGATTATTTGCGATTTCAGACACGAAACTCAGGAAACACCATTTGTAAGCAATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156510-'9-9,'9-8,10-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
PF0034916=Hexokinase_1=PD(0.1=0.0)
C2:
NA
Main Inclusion Isoform:
ENST00000354624fB17117
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATAAGAAATTGCCCCTTGG
R:
TGTGGCAGCTCTCCCTAACTT
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains