HsaEX1016877 @ hg38
Exon Skipping
Gene
ENSG00000156510 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr10:69233014-69239137:+
Coord C1 exon
chr10:69233014-69233133
Coord A exon
chr10:69238129-69238360
Coord C2 exon
chr10:69239042-69239137
Length
232 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTCTTTATTAAGAGA
3' ss Score
6.91
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CTGTTTGAATATGTAGCTGACTGTCTGGCAGATTTCATGAAGACCAAAGATTTAAAGCATAAGAAATTGCCCCTTGGCCTAACTTTTTCTTTCCCCTGTCGACAGACTAAACTGGAAGAG
Seq A exon
AGACGAGGTCTCGCTATGTTGCCCAGGCAGGCCTGGAACTCCTGGCCTCAAGTGATCCACCTGCCTCAGGCTCCCAAGTAGCTGGGACTACAGGTACGGGCCACTCTGCCTGGTTGGGAATCATTTTTCTAAGTTGAAATGAAGTTCCTGAGACAATCCTGCAAGGTTACACCATGTTAGTTCTGTTTTGTGGACCTGGCAAACCATGCATTCTGCATGTATAATACACCAG
Seq C2 exon
GGTGTCCTACTTTCGTGGACAAAAAAGTTTAAGGCACGAGGAGTTCAGGACACGGATGTGGTGAGCCGTCTGACCAAAGCCATGAGAAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156510_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(18.9=100)
A:
PF0034916=Hexokinase_1=PD(2.6=14.8)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Inclusion Isoform:
ENST00000354624fB17118
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATATGTAGCTGACTGTCTGGC
R:
CTTGTGTCTTCTCATGGCTTTGG
Band lengths:
212-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains