HsaEX1016965 @ hg38
Exon Skipping
Gene
ENSG00000234705 | HMGA1P4
Description
high mobility group AT-hook 1 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:39093]
Coordinates
chr9:128663134-128684469:-
Coord C1 exon
chr9:128684366-128684469
Coord A exon
chr9:128663512-128663576
Coord C2 exon
chr9:128663134-128663400
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACAAATACATCTACTTGCAGATT
3' ss Score
6.97
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTGGAAGCCAAGATGAGGAGGTGGCAGAGATTCAGGCCAGAGTTGTGGGCCGCCGTCGGCAGCAAGAACAGAGAGAGAGGTGGACAGATCTGAGAGATACTGAG
Seq A exon
ATTAAAAGGAGCCCAAGCCCCATCTCATCCTAGCACACCCTCCTCCACTGTCCTGGCAGTAGCAG
Seq C2 exon
TCCCTGCACTAGGTCAGACAATCCCCTTTGGGGTACAGGAAACAAAGCAGGAGGAGTTTGAGGTCCCTACACTGCAGCAGAAGAAGAGGAAGGAGTGGGGCCTGAATTGACCATAAAGGATGTAGGGGCCACGTTGTTCCACTGTAATGTCAAGGAGGGGGTGGCCATTGTTTGTCCCAGCCTGGGGCTCCCCCTCTGGTTTCCTATTTGTAGTTACTAGAATGAAAAAAAAACATGATAGATAAATAAATAATCCACTGGCAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234705_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGCAAGAACAGAGAGAG
R:
ACGTGGCCCCTACATCCTTTA
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains