HsaINT1041356 @ hg38
Intron Retention
Gene
ENSG00000119335 | SET
Description
SET nuclear proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10760]
Coordinates
chr9:128683655-128691227:+
Coord C1 exon
chr9:128683655-128684007
Coord A exon
chr9:128684008-128691169
Coord C2 exon
chr9:128691170-128691227
Length
7162 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
TTTTTGCTCCTTTTTTGCAGAAA
3' ss Score
10.53
Exon sequences
Seq C1 exon
GTGCCCCTGCAGAGCGAGGCAGAGAGCAACTAAAAGAAATTTCTCCTGATTGGAGGGTGGGTGGGATGAGGCTGGGGGAGGGGGCCGGGGTGTGTGTCCCACTGTCATGTAAATATCCCTTCCAGGCAGGGCGGCTCCAGTGCAGATTTAAGCCGCTGGCACCTGGGGCAGTCTCAGTGTTCAGCCTGCTTCCGGACGGGCGAGGAGACTCGTGGTCTGGTTCTGGGACTTCCCTAACAGCATGGCCCCTAAACGCCAGTCTCCACTCCCGCCTCAAAAGAAGAAACCAAGACCACCTCCTGCTCTGGGACCGGAGGAGACATCGGCCTCTGCAGGCTTGCCGAAGAAGGGAG
Seq A exon
GTACGTTTCTGCGCTAAGTTTTATTGGAGATTTAAGGGATTTGCAAGGATTGACTCTCTGATTTTTACCCCCCAATCCCTCTTGAGATGTGACCCCTAAGCACCCCCAAAGGGTTTTAAACCTGGGATGGTGGATTAAGTTTGCGTGAAGAACCAGAAGGGACTAGACTGGGAGAACGGGAGTGCACGGGAGCTCATCCCTGCCCCCAACTCAACACTGACCCCTGAGCTTGTCTCCCCAGCCCCCAAACTTCCTCCTCTGGGGCTCCCTTTCTTGGCAAGGGGCACTGCCAGCCAGCCTGAGGCCCCTCCTTCACCCCTCCACATCCAGCCAAATCCCCGATTCCTGGTGGTTCTACCTCAGTATCTCTCAGATCTGTCCACCTCTCTCTCTGTTCTTGCTGCCGACGGCGGCCCACAACTCTGGCCTGAATCTCTGCCACCTCCTCATCTTGGCTTCCAGCTTCCTCCTCCTCCCCTTCAGCCTGAGCATAGCCAATCACGTGGCCCACTCCCCGGCTTAAACCCCTCCCTTGCCTCCCCGCGTCCTCCAGGTGCTCAGAAACTTCTCTGGCCCGCCAACCCGGTCCCCGCCGACCTCTCCTGGTTCACACTTCTGAGACTCCCCACCTGGAGGCCTCCCTCAAGGTGGTACCCTTCACCTTGACCTCTTGGGACTCTACCCTCTGATCTCGGGGCCTAGACACCCACTTGCCCTTTCCTCTCCTTACCTGTGCACCACCTCCAGCTCTCTGCTGGAAAGTCACTTCCTGTGGGCAATCTGTGAGCCCCAACACTTGGGAGTTAGGAGTCCCAGAGTCATGCTGCCTCACCCTCTTGTCATTACATTGTAACCAGCAGTTTCATGCCTGCCCTTCCCCCCATTAAACTTAGAGGTGAGGGCTGCATTTTGGGAGACGTAGCTGGAGCTGGATAGAGAGTTGACTGTTCTGGTGACTAGGTCTGGCTCATAGGGGAGGGTTGTGGTGGAGCCTTCCTGGGCTGGGTGTGGATAGGCCCAGGGCCTGCAAGGAAACGGGAAGCTTTGATTGGCTGAGGGCAGGCAACTCTTATGGAAGAAGCACTGAGGAGGAGTCCTACCTCAGGGCTCAGTGTGGACCTGTTGGCACTTTTACTGGGTCTCAGTCCCTTTTCCTCCACATGGGATGCAGAGACCTCCTGCCCAGCTTGAAACCTACCTTGCTGGGTGAGCCACATAAAACAACTTGTGCTTGTTTTCTCTTCTATAAAATGGGATCCACAGTACTGATCTCCAGGCTTGCTGTGAGTCTGAAATCTAAGGGGAGCACTAGACAGCGCCTAGCACATCATCAGTGCTCTAGAGTGCATTTGTGCGCAGCAAAATGTGGGTGAGTCTTCCTAGTTTCCTTCCAGTGAGCTTCCTGGGAGCATTAACAGGACTGGAAGGGATGGAAAGGTGTGAGGGGGTTCATCTAAACCCAAAGAACAGCTCCTGCTGCTTAGTAGGCACTGATGGCATGCCAGAAGCTGTGCCAAGCACTTCTCTATCCTCACAGCCGTATGCTGTGGACATCCCAATTTTACAGATCAGAACAGGAGGCTCAAAGAGATGTGTATGTGTCTGTGGCGGGGGAGATGTTCCAGGCTCTGGAGATTTTTTGGTCTGTGCTTGGGACACTGCAGCACTGTGGGGGAATGCCAGCCTCTCTCTGTTCCAGTCTTTCTGGCGGTGGGGTTCTGTCCTCTTCAAAGGGAGCCGGGGGCCGGGCGCGGTGGCTGACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGGCTAAACCCCATCTCTACCAAAGACAGTTAGCCAGGCGTGACGATGCATGCCTGTAATCCCAGCTACTTGGGGGGCTAAGGCAGGAGAATTGCTTGAACTCCGGAGGCGGAGGTTGCAATGAGCCGAGTTCGTGCCATTGCACTCCAGCCTGGGCGACAAGAACAACAACAACAACAACAAAAAAAAAAACAACCAGAGGGGCCAGGAGGAGAGGAGAGAGGCAAGGGAGGAATTCTGAGTGAGGGGAGAGGCCAAGAAGAGAGAATGCAGAGCTTCTGGTGTTGGAGACGGGGAGAGAGCAGAGTCCTAAGAGTGGGTGAATAACCTCTCAGTGTGCCCCCGGCTCGCCTGTGTTTACTCACACCCCTGGCCCTTTTGCTTTCTCTTTCTCTTCAACTTCCTAGTGTGCTCATATTTATCTTGAGAAGCACTGTGTGGGGAAGGGCAGGAAAAGAGGGGCAGGGAGGTGGCAGGGAGGGTTGGGAGGCCAGAAAGGGAACCTGAAAGCCCACTCCCCCATCAGAAGGCATTACAGGGTTCCCTGGGACCCCTGCAGGTGCTTGGGAAACAGGCAGATAAGGCACTTAGGAGACATTGTGGGTCAGGAGTGACCCTATGGGTCAGGCTTTGAGGATGGAAGCAGCCAGCCCTTGGCATAGTGTTCTCAGACAGACTCAGCCCAGGAGCGGGTCGTGAAATCAATTTGGTGGGGTGTGACCTGCATTTTAAATAGGAAATTAGAATCACATCACCCTTGGTAAGGGTAAGTTTTGGTTTGTGTGTGCTAGGTCATGATGTCAAAAGTACTTCTGACTGTTGGTCACATTAAAAAAACTGAGGCAGGGTGCGATGGCTAACTCTTGTAATCCCAGAGCTCTGGAAGGCTGAGGCTGAAGGATGGTTTGAGCTCAGGAGTTTGAGACCAGCCTGGGCAACATGGTGATACCTCCTCTCTACAAAAGATAAAAACAAAATTAGCCAGGCAAGGTGGCAGTGGTGCTTGCCTGTGGTCCCAGCTACTCAGAAGGCTGAGGTGTAAGAATCCCCAGAGCCCAGGAGGTCAAGGCTGCAGTGAGCCATGGTTCTGGGCGACAGAGAGAGACCCTGTCTCATAATAATAACAACAATAAAAATAGAAAAACTGTTTTAAGGTAAGGGCTTTGTCAATTGCTACTTGGTTTAGAATCTTGGTTCTGTCACTTGCAACAAAGTTTAGTTTATGCTAGGCACAGTGGGTGGCTCATGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAATACAAAAATTAGCTTGGCATGGTAGTGGGCGCCTGTAATCCCAGATACTCGGGAGGCTAAGACACTCACCGTGCACTGTCTTGAACATGAAAGATGCTGCTTGAGCTTTAAGAGCTGATAGTGGGCCGAGCTCAGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCAGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGTCTGGCCAACATGGTGAAAACCTGTCTCTACCAAAAAATACAAAAATTAGCAGGGCGTGGTGACTCACATCTGTAATCCTAGCAACTCAGGATGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATGGCACCACTGCACTCCAGCCTGGAAGACAGAATGAGACTTGGTCCCCTCCCCCACCAAAAAAAAAAAAAAAAAAAAAGAGCCAATGGTAAAGTGTGAGTTCTGGAAGGCAGAATTCCAACCCCAAGTTCTGGTTAAAAATGTCCAAAGAGAGATTTCAGGTATTTTTTTGTTTTTGTTTTAGAGATAGGGTCTTGCTCTGTCACTCAGGCTTCAGTGCAGTGGCTGCATTGGGGCTCATTGAAGCCTGGAATTCCTGGGCCCAAGCGATCCTCCTGCCTTGGCCTCCCAAAGTGTTGGGATAACAGGAGTGAGCTATTGCATGGCCAGGATTTGAAATTGGCCAGCGTATCACTAAAATCAACAAATGGTACTGGCCGGGCGCAGTGGCTCCCGCCTGTAATCCCAGCACTTTGGGAGGACGAGGTGAGTGGATCACCCCAGGTCAGTAGACCAGCCTGGCCAAGGTGGTGAAACTCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCACGTGCCTGTAGCCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATTGCTTGAACCCGAGAGGCAGAGCTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGGGACAGAGCAAGACTCCCGTCTCAAAACAAACAAACAAATGCTACTAATCAGGGTTTTTCTGGCTTTTTATGGTTCATGTCTTGGGGTGCTGGAGGGACAGAATGTGGGGCATCCGCATTACTTGAAAAGTATTATTTAAACAAAATGCTTTGGCCCTCCTTAGTGGTTCAGAACTTTGCCTCTCAAGTAGAACTTGTTGGCCCCTTTCATCTCTATGAACAGAACACCGCCTATCGCTTGGGGCTGTTGTGAGGCCTCGGTGAGATAACCGTGCCATGCGCTGCTGAAACTGGCACTTAACGCTCAGTATGATTCTTGCGGGCGCTGGGCACCGCGGACTAATGTGGTACCTCCCTGCCTTCACAGGACTTCGAGTTTAATGTGGCTTCAGTGTCGTAACCTTTATCATTTCATAACAGAAACGGGTTCAGAGAGGAAGGGTGACTTGCTCAAGGGTACAAGCTTGCTGGGCAGGGCTTGGACTAAAACCCAGGAATGGCCCTGCGCGCGGATTACACAGCCTGGGGCTTCGCACACGAGCCCGAGTTTGAGTCCGATCGGCAGTTCCCCATCTGGCATCCAGAATGGGGTGCCCCCTGCTTTCTCCACGAAGTGGAAGGCGCCGAGAGGCCGGGCGGAATTCGGGGCCCCCATACGAGGCCGGGCCTGCACTTTCGGGGTGGTGGGCGCCCCGCTCCCGGTGCCCCGCGGAGCAGGGAAGCCGCTCGCTCACCACGTGACGCGCCGGCCGGGGGCACCCGCGCCTCCGTGCGACGCCCCGCCCACCGGCCTGCCGCGCGCCAGTGTCCTGGGTCGGGCCGGAGAGGGGAGAGCGGGGGAGGGGACGCGGCGCGGGGGGCGGCCGTGCGTCGCCGCGCGCCTTCCTCCCACCTCTCGCCGGGCCCTGTGTCTCCGCGCCGCGACTCCGCCCCCTCATCCCGCCGCCCAGGCCAATGGCGCCGCGGCGCGAGCCTCCCCGGCCGGAGGCGGAGCATCCGCGCGGGGCCTGGCGCGCCTGCGCCCTGCGCCCGCCCCTCGCCGTAGGAGGAGGTGGAGGAGGAGGCGGCTCGGGAGAGCGAGCAGCGAGCTGGCTGGATCGCCGAGCGCGAGTGAGGGAGCCGAGCCGCCCGCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGAGCCCGGGCCGGGGCCCGGCACGCCGCCCCAGCCCGTCCCTCGGCGTCAGGCCGCGAGGGTAGCGCGCGCGAGCGAGCGAGGGGGAGGGAGAGCGAGCGAGCGCCGGGAGGAGGCGGCCGGACCGAGCGGGCGCCCGCGCGTGTGGCGTGAGGGGAAGCCGCTTGCCCGCCCCCTTCGCCTTCCCTTCTCTCCCCCTCCCCGCTCCCCCCCCGACCGCGGAGCAGCACCATGTCGGCGCCGGCGGCCAAAGTCAGTAAAAAGGAGCTCAACTCCAACCACGACGGGGCCGACGAGACCTCAGGTGAGAGCAGCGAGCCCGGGGGCCGGCCCGCGCCGCCATCTTCGCCGCCCGCCCCGGCCCGCAGGCCGCCGGCGGGGCCCGGGGCGCGCGCGGGGGGCGCCGGGCGGGGGGGCGCGGCGCGGCCGGGCGGGGGCCCGCGGACTCGGCGCCCTTTTTTGTGCGCGGCTGGGCTGGGGGCCTGGGTGGCCCGCGCCGCGGCGGCCGCGCTGCGAGGCGGGGGCGCTGCGGCCTGCTCGGCGCGGGCGGAGGAGACCCCCCCTTCCTCTCCCCCCTCCCTCGCTCTCCTCCCCCTCCCTCCCTCCCGAGAAGCCTCTCTTTATTGTGCTCCGCCATGATGCCTCGCTCCCATCAGCCGCCGCCGCCGCCACATGGTGCGGCCGGACGCGGCCCCGCGCCCGACCTCCCGCGCGGTTCCGCTTCGCGCCCGGCCCGCGGCGGCGCCCCCGGCACCCCCGCCCAGAGGCTGGCCCCGGCGGGGCTTCTGCCTGGAGCTCGGGTGGGGTGGGGGCGCGGGGAACACGCGGGCGGCCGCGCGCTGGGCCTTGGCCGGCCGGGAGGATGCTCTGGCCAGCCCGGGCGCACTCCCCACGTGGGGCGGCCGCCCCGTCGCGCCAGCGTGCGGAGAAACCTGGCGCCGCGACCAGTGTATCGGGGGTCTTGGAAATGGCTAAGAAAGCTGGCCTCTGCCTAGGAGGCTCTCGGCAGGGGGGCTGCCAATCCGGGATGGTTACCGGAAATGAACCGCGCGATCTGGCCCTTTCACACCCACTTAGCTTTGTAGGGGGTTTGTAGTCTTTACAGGACAAAAGGGCACCTATTCCAGAGCACACCCCCTTTTCTTCCTCTCCCTTCTGTGCCTCACTGCTTTCCGATCTCATAGTTGCTCCCAGTAAGTGCTCCAAAGTCGTGTGGGGCCGCATCTGAGGTCTGCCCGCCTGAATTGGGTTGGAGGGGTTCATGTTCTGAGAAGGCGAAGGCCAGGGTGTAGGATGGTGCCCCGTGACTTTCCAGTCTTTGTAGGCGTGCCTGGTATCTTCATCGTAATAGCAGAGTCGTCAACTTTCTATGAAAGGTGGTTTTACCTTGATAGGTGGTAGTGGTGGCCTAATTTGTATCATTGTCATGGGTTTAGTTTCCATATTCTAGTTAGCAGCTGCTACTGTTCTCTTGCAAGTGTATAATGTGAAATAATAAACGTGAAGACTTCTGAATAAGGTTATTCTGTGTCTTTCATAGTAGAAACCTTAATGATCGGTCTGTTGTAGTGAAACTCTTTAAAAAGGCGCTATAGAAAACCAATTTCTGAGTAAACCAGCAGACAGCATGACTTGTAAATGGTCTTTTAATTAATTAAAAAGAAATTAGTCAGCTACAAGCATGAACATGTGGAACGCTTGCCTTTGTACTAGGCGTTTTTGTTTTTGTTTTAATGGCTTTTGGAATATTATAGTATTAACATCTGGAAAACTAGGTAAATTTATCTTAGAATTAAGTTTTTTGCTCCTTTTTTGCAG
Seq C2 exon
AAAAAGAACAGCAAGAAGCGATTGAACACATTGATGAAGTACAAAATGAAATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119335:ENST00000372692:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF073527=Phage_Mu_Gam=PU(0.1=0.0)
A:
NA
C2:
PF060057=DUF904=FE(22.9=100),PF073527=Phage_Mu_Gam=PU(28.8=95.0),PF0095613=NAP=PU(7.7=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains