MmuINT0142089 @ mm9

Intron Retention

Gene

ENSMUSG00000054766 | Set

Description

SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]

Coordinates

chr2:29917563-29923846:+

Coord C1 exon

chr2:29917563-29917800

Coord A exon

chr2:29917801-29923788

Coord C2 exon

chr2:29923789-29923846

Length

5988 bp

Sequences

Splice sites

5' ss Seq

GAGGTAAGT

5' ss Score

11.08

3' ss Seq

TCCCCTTTCTTGTTTTGCAGAAA

3' ss Score

12.5

Exon sequences

Seq C1 exon

CCGCGGGCAGGGCGGCTGCGAGGCCGACTTAAATCTCCCGCACCTGAGGCCGCCTCAGTTCCTGTGAGTTTCTTCCTGCTGTGAACATCAGGGCTCTGGGCTCTGTCTCCCGGTCATCTCCCTCGCGCCATGGCCCCGAAGCGGCAGTCTGCGATCCTGCCTCAGCCCAAGAAACCCAGACCGGCTGCTGCCCCGAAGCTGGAGGACAAGTCGGCCTCTCCCGGCCTGCCGAAGGGAG

Seq A exon

GTAAGTTCCTCCATTGCGTTTCCTTGGTGATCGACTCTGTGATTGGCTTTTTCTGCTCCCCCCCCATCCCACTGGACTTGAGACCCCCTTACAATCACTCGTGAAAGCTTTTGTCCCGGGGCGGCGGGGAATGAAGGTGATGTGGGAAAAGGAGCAGAAAGCGCGGAACCGGGAGACCAGAGCACAGGGGACTTCCTCCGGCCCGGGACACCACGTGGGACCCAGCTTGCCCTTCCCAGCCCCCAAACTCTCAAATGGGGCTTCTGTCTCGGTAAATGCATCAGCTTGAGGCCTCCCCACCCCTCCAACCACGAGTCCTGGAGATTCAAGCCCGCTCTGATCGTCTCCCTGTTGCTGGAGCCGCCGGCCCACAACTCTGGCCTGAATTACTGCCACCTCGTGTAGCTCCCAGCTTCCTTCTCCCATCCTGCCTGAGCAAAGGGCTAGTCACGTGGTTGTCTCCTACAGTTAAGACCTAGCCTCTCGGCCCTCCAGGTACAAACTAAGACTTCCGGTACCGGGGACCCTGCCCACCTGGTTCCCACCCATCTCTCCGGGTTTCCCAAGGGGTGGCATGGCCTAAAGGCCTGGAGCTGCGTTTTCTCTCCTCCGAGCCTGCACACGTACTTGCCCTATGCCAGGAAACTCGGGTTTGAGGCGGAGTGGGGGGAGTCGCTTTCCAGCTTCTCGCTCTGAGCCTAAGCGCTCCTTATCTGAAACGCTGCTGGCCGCACCCAGAATCGCCCCTTGCAAGCACTTTTCTTCGCTTTCCATTCAGACAGTGGTTTTCATGCCTGCACTTTTCGCCTCCTCTGTTGACCGTGAGAGCTGCGTTTCTTACACACAGCTTCGAGTCGTGGTGTAGTTTTCCCGCGTAGCTTGTGTCTGGTACAGGGCAGAGAAGCAGAAGGAAAATATGCATTTGGATTAAGTCTAGACGCCCTAGGCACCGAGTGGAGTCGGCATCTCTGCACTTCTGTGGACCTGCTTCTCTTTGCTGTGTCCCATTCTCTTGCCTTTCAAATGGTAGGCAAAGACCTGCCCAATGTCTCCAAGTGGTAAAGACAGGGTCTCGATATGACTCTCCTGGTACTCCCACCTTTAACATGCTGGGATTAAAGGCACCGCCCCACCCAGAGTTTTCTTTTCTAAAGGGAGGGCTTCATGTAGATCACGCAGGCCTCCAATTTGCCAGTGAGGATGACCTTGAACTTTCTGATTCAGAGCTGGGATTCCAGGCTAGCACCATCGTGCCTAACGTACTGGGTCTGGAGCCCCGAACATGCTGTATGTACACACGGCAAACACCCTTTTTCTCACTGCTTGCTGAGACTTAAGGGTAAATAAATTGCAGTTGAGATGGGGGTTAATCTTTTCCCTTTTGTTATAAGCAAAGTGTGAGCGAACCTTTTTGGTGTTACACATTTAGTCTGTTGGCAGAAATAGTTAAACCGGGAGAGATGGGAGGGTGCCACCATAGTCCTCCTAAATGTGCCCAGTGGACACAGGTTGACCTGCCAGGCACTGTAGCCAGCCTCTCCACACTGGTATGGAGAGTGCAATGCTTGGTGGCTTCCTGGGTGCACCCATGCCCAGCGCCCCCCCCCCCCTTCTGCTTTGATTTCCCTTAGTATGCTCCTTGTATTCATCTTGAAGTTCAGGGCCCAATCAGAGGAAGGCCCCGTGGGTCTTCTGTAGATTTATGCTGTGGTCACAGGCACCAACCCTTGGACCAGACGTTGTGGTTGAAAAAAACTTCAGTTTTCAGAGCAAGCTTCTTTCTACCTGGGAGTGGCCCATTAAGTCAGTCTATCTAGGCTTGTAGGTAAAAAAAGGAAAGAGATTGGAGAAGTGGTGGTTCAGTGCTTAAGAGCACATTGGCCTTGCCAGGGACCTGGATTTAGTTTCTAGTACTGCAGTGGTGGCTCCCAGCTTCGGCTCCAGGAGGATCCTCTTCTGGCCTTTGCACATAGCACAGTTAAATACTACAGACAAAACACTCTTCTGGGTAAAAAGTAATTTTTAAATTGTTTGTGTAATACAAAGAGAAAGAAACAGACATTCTTGGTGGGTTGGTTTGTTTCCCCCACCCCCCACCCCCCCCGTGGGTGTGCGCCAAGACTTGATGTCAGCTCTTGTCTCTTAAGCCACATTTAAGACATTAGGGGTTTGGGGAGTGAAGAGCAGAAGTTCAAGGCCATCCTTTTCTAGTTCCACTCCCCACCTCCCAACCCCCAGAAAAAGAAAATAACTGGTTTATGTTGGTTCCTTCTCTTGTAAAGTTGAGTTGCCGGTGGGGCTGCCTGGCAGATGACAGTTTATCAGGCACTAGACCTGGGGATCCATTCCCATTACTTAACCCAGTTTAGTTTATCTGTAAAATATACTTAGTATCTTGTTTTGGAAGAGTTTGAGGCAGGGGTCGTGGCTGAGTGATAGGGAACTTGCCTCTTAGGATCCAAGCCCTGTTTTTTAACCCTAAGATTATCTGTAAAAGTTACTTTGTATCTTATGAGGGTTACAGGAAAATACAGCCAAATGCAGCAGGAGCCTAGGGTAGTGATTTGGTATGGGAGTGCTAAGGGCTAATGCTCTAGCCCTTTTACTTTTAGACACTTAGACACTGTAGCCCAGGCTAGCCTCTGCCTCAGCCTAAGTCCTTGTTTTGTTTGTGGAATTTCTTTGCTACTGTGTGCCAGGACCTCACAGGGCTATCAGGAATCATTCCTGGTGAAGGCATCACCTGAGTTTTAGCAAATGTTAGTCACAGTTTATAGCTCTCCTTTTTGTCAGACCGTTCCCTCTTTAAGAAGCCTGTCCACAGTTGCCTGTGTTGGAGGTCTCTAGGCTTGGGAGCTGTGTGGGTTAGAGGTCCTTAGAGGTTGTCGCCAGATTTAAGCTTACCAATTGCAACAGATGAGTGCAATTAATTCACCGACTTGAGCATAAGGTGCACCACCAGGAAGGCCTAGCTGAATTTCCTGGAGTTGAGATGGAAACTTGGAGGAGCACATTTGTATTCTCTCACCATGGACTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGTATTTTACATTTATTGTCTACCCACCATGAATGACTTGACTTAAAGCCACATTGCTTTATGTATAAGAGCTGATAATAAAACGGGAATACTGAGAGTATGGATAGTTCAAGCTCTAGTGGTAGAGGAACCAGGTAGAGAGCTTTCTGGATTTCCAGGACCACGTGTTGGGATCCAGGTAGACAGAGAACTATCTTTTCAAGTCCTGAAAAACAGTGTTTAACCATTAAATCCCTCCGACATAGTGCTTAAGGACTTTTTAATAATCTAAAGCTGTTTTTGTTTGTTTGTTTGTTTGTTTTACTGTTTTAGCCTTTGACTTTTAAACATTTCCCCATTTGTCATCACCAAAAATGTGCTTCCCTCACCACTGAGATCAGGACACCTGTACGAAGTTGAGCAGAAGGACCTGTGGCAGAAAGGTCCTTCCTACAGTCAGAGAACTTTCCTGTGGTTCTTTTGAGTGTGAATATGTAACAGATTTTTAAAAATTCAGAACCGAGGGCAGAGGCTTGAATTGGCCCATGCATAAACCCGGTCCCGCGTGTAAACTGGATAGAGGAACTGCTTGCGTGTGGCTCTGCACAGCAGCCTAGAGTTTGAGTCCCCAGCTTCTCCATCTAGAAAAAAATGAAGGTGCCCGGGTGCAGAACTCAGGCGCCTGATTGTAGCCAGGGTACTCCTAAGGCCTGTACTTTTGAGGGGCTGCGCGCGCCCCCTCTCCAGAGCCCCCAGCCGCCCCGCTAAGGGAAGCCACTGAGCCACCACGTGATGGAGTATTGGGGAACGGAGGCCCCGCCTCTCAAGTCACCGCGCGGCGCGCAAATGTCCCGGGTCGGCTGGAGAAGGGGAGAGCGGGGGAGGGGAGCACCGCGCGGGGGCAGGACCATGCGTCGCTGAGCCGCTTCCTCCCGCCTCTCGTCCAGGCCCCAGTGTCCCCACCGCCGCCGCCGCCACCCGCCACGGCCCCGCCCCCTGCCCCGCGGCCGCGGCCAATCGCTGTACGGCGCGAGCCTCTCCGGCCGGGGGCGGGACTTGCGCAGGCCCGGCGCGCCTGCGCTCTGCGGCCTGCCCCTCGCCGGGAAGAGGAGGAGGTGGTGGTGGAGGAGGTGGAGGAGGAGGAGGAGGCGGCTCAGGGCAATCCAGAAGCGAGCCGGAGCGCGGGGCGCGAGTCGAGGAGCCCAGCCGAGCCGCCGCCGCCTCCCCGCCTTCAGCGAGAGCCCCGGCCGGGGGCTCGCCACAACGCGCCCGGGCCTGCCTCCGCGTCAGGCCCCGCGGGCAGTGCCAGGCAGCCAGGGGGAGGGCAGGCAAGTGAGCGCCGGGAGGAGGCGGCCGGAGCGAGCGGGCGCCGCGCGTGTGGCGTGAGGGGAAGCCGCTGGCCGCCCCCTTGGCCGTCCCTTCGCTCCCCCTCCCCGCTCCCCGCCCCGATCGCGGAGGGCACCATGTCTGCGCCGACGGCCAAAGCCAGTAAAAAGGAGCTCAACTCCAATCACGACGGGGCCGACGAGACCTCAGGTGAGGACCGGGCGCGGCGGGGGCCCGGCCGCGCCGCCATCTTTCGGCCCGGACCGCGGGGCTGCGGGGGGCGCGCGGGGGCCGGAGAGCCGGCGCCTTTTTTGTGTGCGGCCCGGGACCGGGGGGCCGGGGTGGCGCCGTGGCGGTGAGCGGTGCGGCCGAGGCGGGGGCGCTGCGGCCTGCGCGGCGGGCGGAGACCCCCCCTTCCCCCCGCCCGCGCTCTCCTCCCCCTCCCTCCCTCCCGAGAAGCCTCTCTTTATTGTGCTCCGCCATGATGCCTCGCTCCCATCAGCCGCCACCGCCGCCACATGGTGCGGCCGGACGCAGCCTTGCGGCCGGGCCTCTAGTGCCGCCCTGCTTCCCGCCCTGAGCCGGCGCTACCGCGGAACCGGGAACCGGGGTTTGGGGCGGGGTAGGGGCGCGGAGCCGGCGGGAGGATGCTCCAGGCTGCGCGGGTTGCGCACCCCACGTGGGGCAGCCACACTCGGGCGCGCCGGGGGTGCGAGGAATCTGGCCCCGAGGCCGTATGATGCAGGGGCTTCAGGGGCCTTTAGGACGCCTAGCCCTCGCCTGGAGGGTCGTTTCGAGCCCAGGACAGCTGCAGAGCCCGGGCTGGTTACCGGAAATGAGACGCGCGATCGGGCCCCTTCACGCCCACTTGGCTTTGTAAAAGCCTTCACAACCCTCGGACAAAAGGGCACGAAATAGGAGCACACCCCCTCTCCTTTTTATGGCTCCAAGTTTTTGAGTAGGGTTTTCCCACGAAGTGTCCTGAAATACTGCACGGCCGTATATGATGACCAATCTCATCAAGAATGGGTTGAAGGAGTAAGGTCAGGTTTACATTCTAAGTCTGAGAAGACGACTCCGGGAAGTTTGGTGACTAACTGGTCTTTGTCGGTGTATATTGATAATCATAACAAATTGAGAGCACTTTAAATTTTTTTAAAGCAGTTATAACAGTTGATAGTATCCTAATTTGTTTTATGGCCATGGACTAGTTTCCACACTAAGTGGCAGCTGGCACTGGCACCCTTTCTCTTACAATTGTATAATATTAGTAATAAACATGAAAAATTCTTGAATGAGGTGAAGCCTCTCATTCACCTTTAATAATGAAGGCCAATGATTGCACCTTTGTAACGAACGAAACTCTTTGAAAAGTAATCCAGGAGTGAAGCATTTTTCCGAGTAGCGGAGTAGATGCCTTAATTTGTGAATGGTAGGGTAATGAGAAAGTAATTCTCAACTGCGTGCTCGAACACGTGGGGAGCATGCTTTGTGGTGAGCTTCACTGTTGCAGTTCCCATCCTGGGATCAGGAAGAGGAGCTTGTAATTAGTGTTGAGTCTTATGTCCCCTTTCTTGTTTTGCAG

Seq C2 exon

AAAAAGAACAGCAAGAAGCAATTGAACATATTGATGAAGTACAAAATGAAATAGACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000054766-Set:NM_023871:1

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=1.000 A=NA C2=0.950

Domain overlap (PFAM):

C1:

PF053086=Mito_fiss_reg=PU(30.4=94.6),PF0032817=His_Phos_2=PU(24.3=94.6),PF073527=Phage_Mu_Gam=PU(0.1=0.0),PF060057=DUF904=PU(2.4=5.4),PF032559=ACCA=PU(2.7=5.4)

A:

NA

C2:

PF053086=Mito_fiss_reg=FE(16.5=100),PF0032817=His_Phos_2=FE(13.2=100),PF0095613=NAP=PU(13.5=75.0),PF073527=Phage_Mu_Gam=PU(27.1=95.0),PF060057=DUF904=FE(22.9=100),PF032559=ACCA=FE(25.7=100),PF116293=Mst1_SARAH=PU(29.7=55.0)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000099930