HsaINT0148227 @ hg19
Intron Retention
Gene
ENSG00000119335 | SET
Description
SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Coordinates
chr9:131445934-131453506:+
Coord C1 exon
chr9:131445934-131446286
Coord A exon
chr9:131446287-131453448
Coord C2 exon
chr9:131453449-131453506
Length
7162 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
TTTTTGCTCCTTTTTTGCAGAAA
3' ss Score
10.53
Exon sequences
Seq C1 exon
GTGCCCCTGCAGAGCGAGGCAGAGAGCAACTAAAAGAAATTTCTCCTGATTGGAGGGTGGGTGGGATGAGGCTGGGGGAGGGGGCCGGGGTGTGTGTCCCACTGTCATGTAAATATCCCTTCCAGGCAGGGCGGCTCCAGTGCAGATTTAAGCCGCTGGCACCTGGGGCAGTCTCAGTGTTCAGCCTGCTTCCGGACGGGCGAGGAGACTCGTGGTCTGGTTCTGGGACTTCCCTAACAGCATGGCCCCTAAACGCCAGTCTCCACTCCCGCCTCAAAAGAAGAAACCAAGACCACCTCCTGCTCTGGGACCGGAGGAGACATCGGCCTCTGCAGGCTTGCCGAAGAAGGGAG
Seq A exon
GTACGTTTCTGCGCTAAGTTTTATTGGAGATTTAAGGGATTTGCAAGGATTGACTCTCTGATTTTTACCCCCCAATCCCTCTTGAGATGTGACCCCTAAGCACCCCCAAAGGGTTTTAAACCTGGGATGGTGGATTAAGTTTGCGTGAAGAACCAGAAGGGACTAGACTGGGAGAACGGGAGTGCACGGGAGCTCATCCCTGCCCCCAACTCAACACTGACCCCTGAGCTTGTCTCCCCAGCCCCCAAACTTCCTCCTCTGGGGCTCCCTTTCTTGGCAAGGGGCACTGCCAGCCAGCCTGAGGCCCCTCCTTCACCCCTCCACATCCAGCCAAATCCCCGATTCCTGGTGGTTCTACCTCAGTATCTCTCAGATCTGTCCACCTCTCTCTCTGTTCTTGCTGCCGACGGCGGCCCACAACTCTGGCCTGAATCTCTGCCACCTCCTCATCTTGGCTTCCAGCTTCCTCCTCCTCCCCTTCAGCCTGAGCATAGCCAATCACGTGGCCCACTCCCCGGCTTAAACCCCTCCCTTGCCTCCCCGCGTCCTCCAGGTGCTCAGAAACTTCTCTGGCCCGCCAACCCGGTCCCCGCCGACCTCTCCTGGTTCACACTTCTGAGACTCCCCACCTGGAGGCCTCCCTCAAGGTGGTACCCTTCACCTTGACCTCTTGGGACTCTACCCTCTGATCTCGGGGCCTAGACACCCACTTGCCCTTTCCTCTCCTTACCTGTGCACCACCTCCAGCTCTCTGCTGGAAAGTCACTTCCTGTGGGCAATCTGTGAGCCCCAACACTTGGGAGTTAGGAGTCCCAGAGTCATGCTGCCTCACCCTCTTGTCATTACATTGTAACCAGCAGTTTCATGCCTGCCCTTCCCCCCATTAAACTTAGAGGTGAGGGCTGCATTTTGGGAGACGTAGCTGGAGCTGGATAGAGAGTTGACTGTTCTGGTGACTAGGTCTGGCTCATAGGGGAGGGTTGTGGTGGAGCCTTCCTGGGCTGGGTGTGGATAGGCCCAGGGCCTGCAAGGAAACGGGAAGCTTTGATTGGCTGAGGGCAGGCAACTCTTATGGAAGAAGCACTGAGGAGGAGTCCTACCTCAGGGCTCAGTGTGGACCTGTTGGCACTTTTACTGGGTCTCAGTCCCTTTTCCTCCACATGGGATGCAGAGACCTCCTGCCCAGCTTGAAACCTACCTTGCTGGGTGAGCCACATAAAACAACTTGTGCTTGTTTTCTCTTCTATAAAATGGGATCCACAGTACTGATCTCCAGGCTTGCTGTGAGTCTGAAATCTAAGGGGAGCACTAGACAGCGCCTAGCACATCATCAGTGCTCTAGAGTGCATTTGTGCGCAGCAAAATGTGGGTGAGTCTTCCTAGTTTCCTTCCAGTGAGCTTCCTGGGAGCATTAACAGGACTGGAAGGGATGGAAAGGTGTGAGGGGGTTCATCTAAACCCAAAGAACAGCTCCTGCTGCTTAGTAGGCACTGATGGCATGCCAGAAGCTGTGCCAAGCACTTCTCTATCCTCACAGCCGTATGCTGTGGACATCCCAATTTTACAGATCAGAACAGGAGGCTCAAAGAGATGTGTATGTGTCTGTGGCGGGGGAGATGTTCCAGGCTCTGGAGATTTTTTGGTCTGTGCTTGGGACACTGCAGCACTGTGGGGGAATGCCAGCCTCTCTCTGTTCCAGTCTTTCTGGCGGTGGGGTTCTGTCCTCTTCAAAGGGAGCCGGGGGCCGGGCGCGGTGGCTGACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGGCTAAACCCCATCTCTACCAAAGACAGTTAGCCAGGCGTGACGATGCATGCCTGTAATCCCAGCTACTTGGGGGGCTAAGGCAGGAGAATTGCTTGAACTCCGGAGGCGGAGGTTGCAATGAGCCGAGTTCGTGCCATTGCACTCCAGCCTGGGCGACAAGAACAACAACAACAACAACAAAAAAAAAAACAACCAGAGGGGCCAGGAGGAGAGGAGAGAGGCAAGGGAGGAATTCTGAGTGAGGGGAGAGGCCAAGAAGAGAGAATGCAGAGCTTCTGGTGTTGGAGACGGGGAGAGAGCAGAGTCCTAAGAGTGGGTGAATAACCTCTCAGTGTGCCCCCGGCTCGCCTGTGTTTACTCACACCCCTGGCCCTTTTGCTTTCTCTTTCTCTTCAACTTCCTAGTGTGCTCATATTTATCTTGAGAAGCACTGTGTGGGGAAGGGCAGGAAAAGAGGGGCAGGGAGGTGGCAGGGAGGGTTGGGAGGCCAGAAAGGGAACCTGAAAGCCCACTCCCCCATCAGAAGGCATTACAGGGTTCCCTGGGACCCCTGCAGGTGCTTGGGAAACAGGCAGATAAGGCACTTAGGAGACATTGTGGGTCAGGAGTGACCCTATGGGTCAGGCTTTGAGGATGGAAGCAGCCAGCCCTTGGCATAGTGTTCTCAGACAGACTCAGCCCAGGAGCGGGTCGTGAAATCAATTTGGTGGGGTGTGACCTGCATTTTAAATAGGAAATTAGAATCACATCACCCTTGGTAAGGGTAAGTTTTGGTTTGTGTGTGCTAGGTCATGATGTCAAAAGTACTTCTGACTGTTGGTCACATTAAAAAAACTGAGGCAGGGTGCGATGGCTAACTCTTGTAATCCCAGAGCTCTGGAAGGCTGAGGCTGAAGGATGGTTTGAGCTCAGGAGTTTGAGACCAGCCTGGGCAACATGGTGATACCTCCTCTCTACAAAAGATAAAAACAAAATTAGCCAGGCAAGGTGGCAGTGGTGCTTGCCTGTGGTCCCAGCTACTCAGAAGGCTGAGGTGTAAGAATCCCCAGAGCCCAGGAGGTCAAGGCTGCAGTGAGCCATGGTTCTGGGCGACAGAGAGAGACCCTGTCTCATAATAATAACAACAATAAAAATAGAAAAACTGTTTTAAGGTAAGGGCTTTGTCAATTGCTACTTGGTTTAGAATCTTGGTTCTGTCACTTGCAACAAAGTTTAGTTTATGCTAGGCACAGTGGGTGGCTCATGCCTGTAGTCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAATACAAAAATTAGCTTGGCATGGTAGTGGGCGCCTGTAATCCCAGATACTCGGGAGGCTAAGACACTCACCGTGCACTGTCTTGAACATGAAAGATGCTGCTTGAGCTTTAAGAGCTGATAGTGGGCCGAGCTCAGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCAGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGTCTGGCCAACATGGTGAAAACCTGTCTCTACCAAAAAATACAAAAATTAGCAGGGCGTGGTGACTCACATCTGTAATCCTAGCAACTCAGGATGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATGGCACCACTGCACTCCAGCCTGGAAGACAGAATGAGACTTGGTCCCCTCCCCCACCAAAAAAAAAAAAAAAAAAAAAGAGCCAATGGTAAAGTGTGAGTTCTGGAAGGCAGAATTCCAACCCCAAGTTCTGGTTAAAAATGTCCAAAGAGAGATTTCAGGTATTTTTTTGTTTTTGTTTTAGAGATAGGGTCTTGCTCTGTCACTCAGGCTTCAGTGCAGTGGCTGCATTGGGGCTCATTGAAGCCTGGAATTCCTGGGCCCAAGCGATCCTCCTGCCTTGGCCTCCCAAAGTGTTGGGATAACAGGAGTGAGCTATTGCATGGCCAGGATTTGAAATTGGCCAGCGTATCACTAAAATCAACAAATGGTACTGGCCGGGCGCAGTGGCTCCCGCCTGTAATCCCAGCACTTTGGGAGGACGAGGTGAGTGGATCACCCCAGGTCAGTAGACCAGCCTGGCCAAGGTGGTGAAACTCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCACGTGCCTGTAGCCCCAGCTACTCGGGAGGCCGAGGCAGGAGAATTGCTTGAACCCGAGAGGCAGAGCTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGGGACAGAGCAAGACTCCCGTCTCAAAACAAACAAACAAATGCTACTAATCAGGGTTTTTCTGGCTTTTTATGGTTCATGTCTTGGGGTGCTGGAGGGACAGAATGTGGGGCATCCGCATTACTTGAAAAGTATTATTTAAACAAAATGCTTTGGCCCTCCTTAGTGGTTCAGAACTTTGCCTCTCAAGTAGAACTTGTTGGCCCCTTTCATCTCTATGAACAGAACACCGCCTATCGCTTGGGGCTGTTGTGAGGCCTCGGTGAGATAACCGTGCCATGCGCTGCTGAAACTGGCACTTAACGCTCAGTATGATTCTTGCGGGCGCTGGGCACCGCGGACTAATGTGGTACCTCCCTGCCTTCACAGGACTTCGAGTTTAATGTGGCTTCAGTGTCGTAACCTTTATCATTTCATAACAGAAACGGGTTCAGAGAGGAAGGGTGACTTGCTCAAGGGTACAAGCTTGCTGGGCAGGGCTTGGACTAAAACCCAGGAATGGCCCTGCGCGCGGATTACACAGCCTGGGGCTTCGCACACGAGCCCGAGTTTGAGTCCGATCGGCAGTTCCCCATCTGGCATCCAGAATGGGGTGCCCCCTGCTTTCTCCACGAAGTGGAAGGCGCCGAGAGGCCGGGCGGAATTCGGGGCCCCCATACGAGGCCGGGCCTGCACTTTCGGGGTGGTGGGCGCCCCGCTCCCGGTGCCCCGCGGAGCAGGGAAGCCGCTCGCTCACCACGTGACGCGCCGGCCGGGGGCACCCGCGCCTCCGTGCGACGCCCCGCCCACCGGCCTGCCGCGCGCCAGTGTCCTGGGTCGGGCCGGAGAGGGGAGAGCGGGGGAGGGGACGCGGCGCGGGGGGCGGCCGTGCGTCGCCGCGCGCCTTCCTCCCACCTCTCGCCGGGCCCTGTGTCTCCGCGCCGCGACTCCGCCCCCTCATCCCGCCGCCCAGGCCAATGGCGCCGCGGCGCGAGCCTCCCCGGCCGGAGGCGGAGCATCCGCGCGGGGCCTGGCGCGCCTGCGCCCTGCGCCCGCCCCTCGCCGTAGGAGGAGGTGGAGGAGGAGGCGGCTCGGGAGAGCGAGCAGCGAGCTGGCTGGATCGCCGAGCGCGAGTGAGGGAGCCGAGCCGCCCGCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGAGCCCGGGCCGGGGCCCGGCACGCCGCCCCAGCCCGTCCCTCGGCGTCAGGCCGCGAGGGTAGCGCGCGCGAGCGAGCGAGGGGGAGGGAGAGCGAGCGAGCGCCGGGAGGAGGCGGCCGGACCGAGCGGGCGCCCGCGCGTGTGGCGTGAGGGGAAGCCGCTTGCCCGCCCCCTTCGCCTTCCCTTCTCTCCCCCTCCCCGCTCCCCCCCCGACCGCGGAGCAGCACCATGTCGGCGCCGGCGGCCAAAGTCAGTAAAAAGGAGCTCAACTCCAACCACGACGGGGCCGACGAGACCTCAGGTGAGAGCAGCGAGCCCGGGGGCCGGCCCGCGCCGCCATCTTCGCCGCCCGCCCCGGCCCGCAGGCCGCCGGCGGGGCCCGGGGCGCGCGCGGGGGGCGCCGGGCGGGGGGGCGCGGCGCGGCCGGGCGGGGGCCCGCGGACTCGGCGCCCTTTTTTGTGCGCGGCTGGGCTGGGGGCCTGGGTGGCCCGCGCCGCGGCGGCCGCGCTGCGAGGCGGGGGCGCTGCGGCCTGCTCGGCGCGGGCGGAGGAGACCCCCCCTTCCTCTCCCCCCTCCCTCGCTCTCCTCCCCCTCCCTCCCTCCCGAGAAGCCTCTCTTTATTGTGCTCCGCCATGATGCCTCGCTCCCATCAGCCGCCGCCGCCGCCACATGGTGCGGCCGGACGCGGCCCCGCGCCCGACCTCCCGCGCGGTTCCGCTTCGCGCCCGGCCCGCGGCGGCGCCCCCGGCACCCCCGCCCAGAGGCTGGCCCCGGCGGGGCTTCTGCCTGGAGCTCGGGTGGGGTGGGGGCGCGGGGAACACGCGGGCGGCCGCGCGCTGGGCCTTGGCCGGCCGGGAGGATGCTCTGGCCAGCCCGGGCGCACTCCCCACGTGGGGCGGCCGCCCCGTCGCGCCAGCGTGCGGAGAAACCTGGCGCCGCGACCAGTGTATCGGGGGTCTTGGAAATGGCTAAGAAAGCTGGCCTCTGCCTAGGAGGCTCTCGGCAGGGGGGCTGCCAATCCGGGATGGTTACCGGAAATGAACCGCGCGATCTGGCCCTTTCACACCCACTTAGCTTTGTAGGGGGTTTGTAGTCTTTACAGGACAAAAGGGCACCTATTCCAGAGCACACCCCCTTTTCTTCCTCTCCCTTCTGTGCCTCACTGCTTTCCGATCTCATAGTTGCTCCCAGTAAGTGCTCCAAAGTCGTGTGGGGCCGCATCTGAGGTCTGCCCGCCTGAATTGGGTTGGAGGGGTTCATGTTCTGAGAAGGCGAAGGCCAGGGTGTAGGATGGTGCCCCGTGACTTTCCAGTCTTTGTAGGCGTGCCTGGTATCTTCATCGTAATAGCAGAGTCGTCAACTTTCTATGAAAGGTGGTTTTACCTTGATAGGTGGTAGTGGTGGCCTAATTTGTATCATTGTCATGGGTTTAGTTTCCATATTCTAGTTAGCAGCTGCTACTGTTCTCTTGCAAGTGTATAATGTGAAATAATAAACGTGAAGACTTCTGAATAAGGTTATTCTGTGTCTTTCATAGTAGAAACCTTAATGATCGGTCTGTTGTAGTGAAACTCTTTAAAAAGGCGCTATAGAAAACCAATTTCTGAGTAAACCAGCAGACAGCATGACTTGTAAATGGTCTTTTAATTAATTAAAAAGAAATTAGTCAGCTACAAGCATGAACATGTGGAACGCTTGCCTTTGTACTAGGCGTTTTTGTTTTTGTTTTAATGGCTTTTGGAATATTATAGTATTAACATCTGGAAAACTAGGTAAATTTATCTTAGAATTAAGTTTTTTGCTCCTTTTTTGCAG
Seq C2 exon
AAAAAGAACAGCAAGAAGCGATTGAACACATTGATGAAGTACAAAATGAAATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119335-SET:NM_001122821:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.680
Domain overlap (PFAM):
C1:
PF053086=Mito_fiss_reg=PU(32.2=97.4),PF073527=Phage_Mu_Gam=PU(0.1=0.0),PF060057=DUF904=PU(2.5=5.3)
A:
NA
C2:
PF053086=Mito_fiss_reg=FE(16.5=100),PF073527=Phage_Mu_Gam=PU(28.8=95.0),PF060057=DUF904=FE(23.5=100),PF0095613=NAP=PU(7.7=75.0),PF116293=Mst1_SARAH=PU(29.7=55.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)