MmuINT1030983 @ mm10
Intron Retention
Gene
ENSMUSG00000054766 | Set
Description
SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
Coordinates
chr2:30061853-30068326:+
Coord C1 exon
chr2:30061853-30062280
Coord A exon
chr2:30062281-30068268
Coord C2 exon
chr2:30068269-30068326
Length
5988 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCCCCTTTCTTGTTTTGCAGAAA
3' ss Score
12.5
Exon sequences
Seq C1 exon
ACAGGCTTCCACGTGCAACCCGGGGTTCAAAGGCAGCCCCGCGCCGCACCCGCAGGAGCCGCCCCCTTCTCCATCGCCGGGAAGCCCCCGCCGCGAACAACTCAAAGAAGTTTCTGCTGATTGGAGGGAGGGCGAGGAGGCTGGGAGAAGGGGCGTGGGGGTGTGTGTCCCACTGTCATGTAAATATCCCCCGCGGGCAGGGCGGCTGCGAGGCCGACTTAAATCTCCCGCACCTGAGGCCGCCTCAGTTCCTGTGAGTTTCTTCCTGCTGTGAACATCAGGGCTCTGGGCTCTGTCTCCCGGTCATCTCCCTCGCGCCATGGCCCCGAAGCGGCAGTCTGCGATCCTGCCTCAGCCCAAGAAACCCAGACCGGCTGCTGCCCCGAAGCTGGAGGACAAGTCGGCCTCTCCCGGCCTGCCGAAGGGAG
Seq A exon
GTAAGTTCCTCCATTGCGTTTCCTTGGTGATCGACTCTGTGATTGGCTTTTTCTGCTCCCCCCCCATCCCACTGGACTTGAGACCCCCTTACAATCACTCGTGAAAGCTTTTGTCCCGGGGCGGCGGGGAATGAAGGTGATGTGGGAAAAGGAGCAGAAAGCGCGGAACCGGGAGACCAGAGCACAGGGGACTTCCTCCGGCCCGGGACACCACGTGGGACCCAGCTTGCCCTTCCCAGCCCCCAAACTCTCAAATGGGGCTTCTGTCTCGGTAAATGCATCAGCTTGAGGCCTCCCCACCCCTCCAACCACGAGTCCTGGAGATTCAAGCCCGCTCTGATCGTCTCCCTGTTGCTGGAGCCGCCGGCCCACAACTCTGGCCTGAATTACTGCCACCTCGTGTAGCTCCCAGCTTCCTTCTCCCATCCTGCCTGAGCAAAGGGCTAGTCACGTGGTTGTCTCCTACAGTTAAGACCTAGCCTCTCGGCCCTCCAGGTACAAACTAAGACTTCCGGTACCGGGGACCCTGCCCACCTGGTTCCCACCCATCTCTCCGGGTTTCCCAAGGGGTGGCATGGCCTAAAGGCCTGGAGCTGCGTTTTCTCTCCTCCGAGCCTGCACACGTACTTGCCCTATGCCAGGAAACTCGGGTTTGAGGCGGAGTGGGGGGAGTCGCTTTCCAGCTTCTCGCTCTGAGCCTAAGCGCTCCTTATCTGAAACGCTGCTGGCCGCACCCAGAATCGCCCCTTGCAAGCACTTTTCTTCGCTTTCCATTCAGACAGTGGTTTTCATGCCTGCACTTTTCGCCTCCTCTGTTGACCGTGAGAGCTGCGTTTCTTACACACAGCTTCGAGTCGTGGTGTAGTTTTCCCGCGTAGCTTGTGTCTGGTACAGGGCAGAGAAGCAGAAGGAAAATATGCATTTGGATTAAGTCTAGACGCCCTAGGCACCGAGTGGAGTCGGCATCTCTGCACTTCTGTGGACCTGCTTCTCTTTGCTGTGTCCCATTCTCTTGCCTTTCAAATGGTAGGCAAAGACCTGCCCAATGTCTCCAAGTGGTAAAGACAGGGTCTCGATATGACTCTCCTGGTACTCCCACCTTTAACATGCTGGGATTAAAGGCACCGCCCCACCCAGAGTTTTCTTTTCTAAAGGGAGGGCTTCATGTAGATCACGCAGGCCTCCAATTTGCCAGTGAGGATGACCTTGAACTTTCTGATTCAGAGCTGGGATTCCAGGCTAGCACCATCGTGCCTAACGTACTGGGTCTGGAGCCCCGAACATGCTGTATGTACACACGGCAAACACCCTTTTTCTCACTGCTTGCTGAGACTTAAGGGTAAATAAATTGCAGTTGAGATGGGGGTTAATCTTTTCCCTTTTGTTATAAGCAAAGTGTGAGCGAACCTTTTTGGTGTTACACATTTAGTCTGTTGGCAGAAATAGTTAAACCGGGAGAGATGGGAGGGTGCCACCATAGTCCTCCTAAATGTGCCCAGTGGACACAGGTTGACCTGCCAGGCACTGTAGCCAGCCTCTCCACACTGGTATGGAGAGTGCAATGCTTGGTGGCTTCCTGGGTGCACCCATGCCCAGCGCCCCCCCCCCCCTTCTGCTTTGATTTCCCTTAGTATGCTCCTTGTATTCATCTTGAAGTTCAGGGCCCAATCAGAGGAAGGCCCCGTGGGTCTTCTGTAGATTTATGCTGTGGTCACAGGCACCAACCCTTGGACCAGACGTTGTGGTTGAAAAAAACTTCAGTTTTCAGAGCAAGCTTCTTTCTACCTGGGAGTGGCCCATTAAGTCAGTCTATCTAGGCTTGTAGGTAAAAAAAGGAAAGAGATTGGAGAAGTGGTGGTTCAGTGCTTAAGAGCACATTGGCCTTGCCAGGGACCTGGATTTAGTTTCTAGTACTGCAGTGGTGGCTCCCAGCTTCGGCTCCAGGAGGATCCTCTTCTGGCCTTTGCACATAGCACAGTTAAATACTACAGACAAAACACTCTTCTGGGTAAAAAGTAATTTTTAAATTGTTTGTGTAATACAAAGAGAAAGAAACAGACATTCTTGGTGGGTTGGTTTGTTTCCCCCACCCCCCACCCCCCCCGTGGGTGTGCGCCAAGACTTGATGTCAGCTCTTGTCTCTTAAGCCACATTTAAGACATTAGGGGTTTGGGGAGTGAAGAGCAGAAGTTCAAGGCCATCCTTTTCTAGTTCCACTCCCCACCTCCCAACCCCCAGAAAAAGAAAATAACTGGTTTATGTTGGTTCCTTCTCTTGTAAAGTTGAGTTGCCGGTGGGGCTGCCTGGCAGATGACAGTTTATCAGGCACTAGACCTGGGGATCCATTCCCATTACTTAACCCAGTTTAGTTTATCTGTAAAATATACTTAGTATCTTGTTTTGGAAGAGTTTGAGGCAGGGGTCGTGGCTGAGTGATAGGGAACTTGCCTCTTAGGATCCAAGCCCTGTTTTTTAACCCTAAGATTATCTGTAAAAGTTACTTTGTATCTTATGAGGGTTACAGGAAAATACAGCCAAATGCAGCAGGAGCCTAGGGTAGTGATTTGGTATGGGAGTGCTAAGGGCTAATGCTCTAGCCCTTTTACTTTTAGACACTTAGACACTGTAGCCCAGGCTAGCCTCTGCCTCAGCCTAAGTCCTTGTTTTGTTTGTGGAATTTCTTTGCTACTGTGTGCCAGGACCTCACAGGGCTATCAGGAATCATTCCTGGTGAAGGCATCACCTGAGTTTTAGCAAATGTTAGTCACAGTTTATAGCTCTCCTTTTTGTCAGACCGTTCCCTCTTTAAGAAGCCTGTCCACAGTTGCCTGTGTTGGAGGTCTCTAGGCTTGGGAGCTGTGTGGGTTAGAGGTCCTTAGAGGTTGTCGCCAGATTTAAGCTTACCAATTGCAACAGATGAGTGCAATTAATTCACCGACTTGAGCATAAGGTGCACCACCAGGAAGGCCTAGCTGAATTTCCTGGAGTTGAGATGGAAACTTGGAGGAGCACATTTGTATTCTCTCACCATGGACTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGTATTTTACATTTATTGTCTACCCACCATGAATGACTTGACTTAAAGCCACATTGCTTTATGTATAAGAGCTGATAATAAAACGGGAATACTGAGAGTATGGATAGTTCAAGCTCTAGTGGTAGAGGAACCAGGTAGAGAGCTTTCTGGATTTCCAGGACCACGTGTTGGGATCCAGGTAGACAGAGAACTATCTTTTCAAGTCCTGAAAAACAGTGTTTAACCATTAAATCCCTCCGACATAGTGCTTAAGGACTTTTTAATAATCTAAAGCTGTTTTTGTTTGTTTGTTTGTTTGTTTTACTGTTTTAGCCTTTGACTTTTAAACATTTCCCCATTTGTCATCACCAAAAATGTGCTTCCCTCACCACTGAGATCAGGACACCTGTACGAAGTTGAGCAGAAGGACCTGTGGCAGAAAGGTCCTTCCTACAGTCAGAGAACTTTCCTGTGGTTCTTTTGAGTGTGAATATGTAACAGATTTTTAAAAATTCAGAACCGAGGGCAGAGGCTTGAATTGGCCCATGCATAAACCCGGTCCCGCGTGTAAACTGGATAGAGGAACTGCTTGCGTGTGGCTCTGCACAGCAGCCTAGAGTTTGAGTCCCCAGCTTCTCCATCTAGAAAAAAATGAAGGTGCCCGGGTGCAGAACTCAGGCGCCTGATTGTAGCCAGGGTACTCCTAAGGCCTGTACTTTTGAGGGGCTGCGCGCGCCCCCTCTCCAGAGCCCCCAGCCGCCCCGCTAAGGGAAGCCACTGAGCCACCACGTGATGGAGTATTGGGGAACGGAGGCCCCGCCTCTCAAGTCACCGCGCGGCGCGCAAATGTCCCGGGTCGGCTGGAGAAGGGGAGAGCGGGGGAGGGGAGCACCGCGCGGGGGCAGGACCATGCGTCGCTGAGCCGCTTCCTCCCGCCTCTCGTCCAGGCCCCAGTGTCCCCACCGCCGCCGCCGCCACCCGCCACGGCCCCGCCCCCTGCCCCGCGGCCGCGGCCAATCGCTGTACGGCGCGAGCCTCTCCGGCCGGGGGCGGGACTTGCGCAGGCCCGGCGCGCCTGCGCTCTGCGGCCTGCCCCTCGCCGGGAAGAGGAGGAGGTGGTGGTGGAGGAGGTGGAGGAGGAGGAGGAGGCGGCTCAGGGCAATCCAGAAGCGAGCCGGAGCGCGGGGCGCGAGTCGAGGAGCCCAGCCGAGCCGCCGCCGCCTCCCCGCCTTCAGCGAGAGCCCCGGCCGGGGGCTCGCCACAACGCGCCCGGGCCTGCCTCCGCGTCAGGCCCCGCGGGCAGTGCCAGGCAGCCAGGGGGAGGGCAGGCAAGTGAGCGCCGGGAGGAGGCGGCCGGAGCGAGCGGGCGCCGCGCGTGTGGCGTGAGGGGAAGCCGCTGGCCGCCCCCTTGGCCGTCCCTTCGCTCCCCCTCCCCGCTCCCCGCCCCGATCGCGGAGGGCACCATGTCTGCGCCGACGGCCAAAGCCAGTAAAAAGGAGCTCAACTCCAATCACGACGGGGCCGACGAGACCTCAGGTGAGGACCGGGCGCGGCGGGGGCCCGGCCGCGCCGCCATCTTTCGGCCCGGACCGCGGGGCTGCGGGGGGCGCGCGGGGGCCGGAGAGCCGGCGCCTTTTTTGTGTGCGGCCCGGGACCGGGGGGCCGGGGTGGCGCCGTGGCGGTGAGCGGTGCGGCCGAGGCGGGGGCGCTGCGGCCTGCGCGGCGGGCGGAGACCCCCCCTTCCCCCCGCCCGCGCTCTCCTCCCCCTCCCTCCCTCCCGAGAAGCCTCTCTTTATTGTGCTCCGCCATGATGCCTCGCTCCCATCAGCCGCCACCGCCGCCACATGGTGCGGCCGGACGCAGCCTTGCGGCCGGGCCTCTAGTGCCGCCCTGCTTCCCGCCCTGAGCCGGCGCTACCGCGGAACCGGGAACCGGGGTTTGGGGCGGGGTAGGGGCGCGGAGCCGGCGGGAGGATGCTCCAGGCTGCGCGGGTTGCGCACCCCACGTGGGGCAGCCACACTCGGGCGCGCCGGGGGTGCGAGGAATCTGGCCCCGAGGCCGTATGATGCAGGGGCTTCAGGGGCCTTTAGGACGCCTAGCCCTCGCCTGGAGGGTCGTTTCGAGCCCAGGACAGCTGCAGAGCCCGGGCTGGTTACCGGAAATGAGACGCGCGATCGGGCCCCTTCACGCCCACTTGGCTTTGTAAAAGCCTTCACAACCCTCGGACAAAAGGGCACGAAATAGGAGCACACCCCCTCTCCTTTTTATGGCTCCAAGTTTTTGAGTAGGGTTTTCCCACGAAGTGTCCTGAAATACTGCACGGCCGTATATGATGACCAATCTCATCAAGAATGGGTTGAAGGAGTAAGGTCAGGTTTACATTCTAAGTCTGAGAAGACGACTCCGGGAAGTTTGGTGACTAACTGGTCTTTGTCGGTGTATATTGATAATCATAACAAATTGAGAGCACTTTAAATTTTTTTAAAGCAGTTATAACAGTTGATAGTATCCTAATTTGTTTTATGGCCATGGACTAGTTTCCACACTAAGTGGCAGCTGGCACTGGCACCCTTTCTCTTACAATTGTATAATATTAGTAATAAACATGAAAAATTCTTGAATGAGGTGAAGCCTCTCATTCACCTTTAATAATGAAGGCCAATGATTGCACCTTTGTAACGAACGAAACTCTTTGAAAAGTAATCCAGGAGTGAAGCATTTTTCCGAGTAGCGGAGTAGATGCCTTAATTTGTGAATGGTAGGGTAATGAGAAAGTAATTCTCAACTGCGTGCTCGAACACGTGGGGAGCATGCTTTGTGGTGAGCTTCACTGTTGCAGTTCCCATCCTGGGATCAGGAAGAGGAGCTTGTAATTAGTGTTGAGTCTTATGTCCCCTTTCTTGTTTTGCAG
Seq C2 exon
AAAAAGAACAGCAAGAAGCAATTGAACATATTGATGAAGTACAAAATGAAATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054766:ENSMUST00000102866:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.950
Domain overlap (PFAM):
C1:
PF060057=DUF904=PU(2.5=5.4),PF073527=Phage_Mu_Gam=PU(0.1=0.0)
A:
NA
C2:
PF0032817=His_Phos_2=FE(13.2=100),PF060057=DUF904=FE(22.9=100),PF073527=Phage_Mu_Gam=PU(27.1=95.0),PF0095613=NAP=PU(13.5=75.0),PF116293=Mst1_SARAH=PU(29.7=55.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types