RnoINT0133729 @ rn6
Intron Retention
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8633753-8634457:+
Coord C1 exon
chr3:8633753-8633837
Coord A exon
chr3:8633838-8634399
Coord C2 exon
chr3:8634400-8634457
Length
562 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
TGTTCCCTTTTGTTTTGCAGAAA
3' ss Score
11.41
Exon sequences
Seq C1 exon
TTTTTGAGTGGGGTTTTCTCAGAAAGTGTTCAGAAATCCTGCACGGCCGTGTACGATGACCAATCATCAAGAATGGGTTGGAAGA
Seq A exon
GTAAGGTCAGGTTGGAATCAGGTTTTCATTCTAAGTCTGTAAAGACGACTGTGGTAGTTTGGTGACTAAACTGGTCTTTTTCGGTGTATGTTGATAATCATAATAAGTTGAAGCACTGGGGCTTTTATTATTATATTTTTTTAAAGCGGTTGTACCAGTTGGTAGTATCCTAATTTGACCATGGATTAGTTTCCACACTGTTAGCAGCTGTCACCATTCTCTTAGAAATGTATGTAATTAGTAGTAATAAACATGAAGAATTTTTGAATGAGGCTAAGCCTCTTGTCCACCTCTCATAATGAAGGCCAATGATTGAACCTTTGTAAAACTTTAAAAAGTGATCCAGTGAAGAAGCATTTTCCCGAGGTAGTGGAGTAGATTCCTTAATTTGTGAATGGTAGGGTAATGAGAAGGTAATTTGTCAACTGCGGGCTTGAGCACGTGGGGAGCATGCTTTGTAGTAAGCACATTTCTACAGCTTTACTGTTGCAGTTCCCATCCTAGTATCAGGAAGTGTAGGTTGTAATTAGTATTGAGTCTTATGTTCCCTTTTGTTTTGCAG
Seq C2 exon
AAAAAGAACAGCAAGAAGCAATTGAACATATTGATGAAGTACAAAATGAAATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892:ENSRNOT00000050528:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.230
Domain overlap (PFAM):
C1:
PF073527=Phage_Mu_Gam=PU(1.5=3.4)
A:
NA
C2:
PF073527=Phage_Mu_Gam=FE(28.8=100),PF060057=DUF904=PU(23.1=90.0),PF0095613=NAP=PU(10.7=75.0)
Main Inclusion Isoform:
ENSRNOT00000081787fB13205
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]