HsaEX1017087 @ hg38
Exon Skipping
Gene
ENSG00000253552 | HOXA-AS2
Description
HOXA cluster antisense RNA 2 [Source:HGNC Symbol;Acc:HGNC:43745]
Coordinates
chr7:27109195-27123377:+
Coord C1 exon
chr7:27109195-27109263
Coord A exon
chr7:27110035-27110195
Coord C2 exon
chr7:27121919-27123377
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACATGCTCCATCGCTCCTAGGCT
3' ss Score
7.25
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGAGATGGGCAGACTGGAAACCTCAAACTGGAAGGCCTTCTCTGCCCAAAGAAGAGATCCCATTGAAG
Seq A exon
GCTGTGCTGGATGTCGTGGGCAGTAGCTTGGGGACCAGGAGCCAGGCCAGAGGACCCTCTTCCAGAAGGCACTCCTTTACCTGAGCTGGAGCTGCTGGTTTTCTGCTTTGTGTTTTGTCGAGACTCTTTCATCCAGGGGAAGATTTGTTTGGCCACTGTGG
Seq C2 exon
GAAAAGGAAACGCCAAGACATAGAAAACCACGCTTTTCCCGTAGGAAGAACCGATGATGAGCCCTGATGAAAGAAGGAAGAAGACCCGCTGTCTGCGAAGGCCTAAAGGTTAGAAATACAGCAATTTTTCTCATGCCGAAGGAAAGGCAAAATGGTCTAAGAAACTGCAAGAGTGTGATACAAGTTTTCCTCAACAGCGAGCTGGGACTGGCGACAATTTCTTAACTCACAGCCTCCGCAGTCGCCTTAGTCGACAAAGAGAGCAGCCCACGCAGCGGCCGCCGCGCCCGTGCCCGTGGCCTTTACTTGCTTTTGCCCTGAAGTTCAGTGTAGTGGTTTGTTTGGGGCTTGCAGGAAGAAACAAACACACTCCCTCTGACTCTCCACAACCCATCTTTGCCTTCTGCAACCGCTTCTCCTGCCCATCGCTGGTTTTGGGGTAGGCTCTTTGTCTGCCTGAGGCCCCGCACTCGCAGGGCAAGAAGCTTAAAGGAATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000253552_MULTIEX3-2/5=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGGAAGGCCTTCTCTGC
R:
CCAGCTCGCTGTTGAGGAAAA
Band lengths:
249-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains