HsaEX1017089 @ hg38
Exon Skipping
Gene
ENSG00000253552 | HOXA-AS2
Description
HOXA cluster antisense RNA 2 [Source:HGNC Symbol;Acc:HGNC:43745]
Coordinates
chr7:27114526-27123377:+
Coord C1 exon
chr7:27114526-27114579
Coord A exon
chr7:27115357-27115571
Coord C2 exon
chr7:27121919-27123377
Length
215 bp
Sequences
Splice sites
3' ss Seq
CTCCTTATGGCATATTGCAGAGC
3' ss Score
5.41
5' ss Seq
TCCGTAAGA
5' ss Score
6.41
Exon sequences
Seq C1 exon
GCAGAAACTGCTGACATCCTAGCAGCCAGGAGAAAAATGTCCTGGGAGAGACAG
Seq A exon
AGCAACTTGAAAGGGGGAGCTGGCCGCGTAGGAGGTGAGAGCCAGCCGCAAAAATCCGTTCGGCGGCATTTTCTCTTCAAACCCGCCCGGTCGGATGTGGCATTTGAAGAAAGAAGGCGTGGGTCAATAATCAACCCGCACTTTCTCCTCCAAACTGCTGACGCGACTCTCACCGCCTTCTCAGCTAAGCCAGCTGCCGGGAAGGCCAGCTCTCC
Seq C2 exon
GAAAAGGAAACGCCAAGACATAGAAAACCACGCTTTTCCCGTAGGAAGAACCGATGATGAGCCCTGATGAAAGAAGGAAGAAGACCCGCTGTCTGCGAAGGCCTAAAGGTTAGAAATACAGCAATTTTTCTCATGCCGAAGGAAAGGCAAAATGGTCTAAGAAACTGCAAGAGTGTGATACAAGTTTTCCTCAACAGCGAGCTGGGACTGGCGACAATTTCTTAACTCACAGCCTCCGCAGTCGCCTTAGTCGACAAAGAGAGCAGCCCACGCAGCGGCCGCCGCGCCCGTGCCCGTGGCCTTTACTTGCTTTTGCCCTGAAGTTCAGTGTAGTGGTTTGTTTGGGGCTTGCAGGAAGAAACAAACACACTCCCTCTGACTCTCCACAACCCATCTTTGCCTTCTGCAACCGCTTCTCCTGCCCATCGCTGGTTTTGGGGTAGGCTCTTTGTCTGCCTGAGGCCCCGCACTCGCAGGGCAAGAAGCTTAAAGGAATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000253552_MULTIEX3-4/5=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCTAGCAGCCAGGAGA
R:
TTTGTCGACTAAGGCGACTGC
Band lengths:
300-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains