HsaEX1017097 @ hg38
Exon Skipping
Gene
ENSG00000120068 | HOXB8
Description
homeobox B8 [Source:HGNC Symbol;Acc:HGNC:5119]
Coordinates
chr17:48613206-48614939:-
Coord C1 exon
chr17:48614281-48614939
Coord A exon
chr17:48613880-48613936
Coord C2 exon
chr17:48613206-48613506
Length
57 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCAATTGCTTTATAGTTT
3' ss Score
6.84
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TTCCCCCTCCCCACCCCCTCCCCAACAGCCCCCAACTATAGCCTCCGCCGCCGCCGCCGCCTCAAAATTCAATAAAATGAGCTCTTATTTCGTCAACTCACTGTTCTCCAAATACAAAACCGGGGAGTCCCTGCGCCCCAATTATTATGACTGCGGCTTCGCCCAGGACCTGGGCGGCCGACCCACCGTGGTGTACGGTCCCAGCAGCGGCGGCAGCTTCCAGCACCCGTCGCAAATCCAGGAGTTCTACCACGGGCCGTCGTCGCTGTCCACGGCTCCCTACCAGCAGAACCCGTGCGCCGTGGCGTGCCACGGGGACCCCGGCAATTTCTACGGCTACGACCCGCTGCAACGCCAGAGCCTATTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTTGCCGCCGCCAGCGGCCTGGGCGAGGAGGCCGAGGGCTCCGAGCAGAGCCCGTCGCCCACACAGCTCTTCCCCTGGATGCGCCCGCAAG
Seq A exon
TTTAATTACCCTGAAGAAACTTTTCTTCTGGGGCAGAGGCTCTGGGGGCTTTTCAAG
Seq C2 exon
CCGCCGGACGCAGGCGAGGCCGACAGACCTACAGCCGCTACCAGACCCTGGAGCTGGAGAAGGAGTTCCTATTTAATCCCTATCTGACTCGTAAGCGGCGAATCGAGGTATCGCACGCCCTGGGACTGACAGAGAGACAGGTCAAAATCTGGTTCCAGAACCGGAGGATGAAGTGGAAAAAAGAGAACAACAAAGACAAGTTCCCCAGCAGCAAATGCGAGCAGGAGGAGCTGGAGAAACAGAAGCTGGAGCGGGCCCCAGAGGCGGCGGACGAGGGCGACGCGCAGAAGGGCGACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120068_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.000 C2=0.466
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=56.5)
Main Inclusion Isoform:
ENST00000239144fB17203
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGCTCTTCCCCTGGATG
R:
TCGCCGCTTACGAGTCAGATA
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains