MmuEX1014792 @ mm10
Exon Skipping
Gene
ENSMUSG00000056648 | Hoxb8
Description
homeobox B8 [Source:MGI Symbol;Acc:MGI:96189]
Coordinates
chr11:96281905-96285315:+
Coord C1 exon
chr11:96281905-96283386
Coord A exon
chr11:96283760-96283816
Coord C2 exon
chr11:96284163-96285315
Length
57 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCAATTGCTTTATAGTTT
3' ss Score
6.84
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CCCCTCCCCACCCCCTCCCCAACAGCCCCCAACTACAGCCTGCGCCGCCGCCGCCGCCGCCTCAAAATTCAATAAAATGAGCTCTTATTTCGTCAACTCACTGTTCTCCAAATACAAAACCGGGGAGTCCCTGCGCCCCAATTATTATGACTGCGGCTTCGCCCAGGACCTGGGCGGCCGACCCACCGTGGTGTACGGTCCCAGCAGCGGCGGCAGCTTCCAGCACCCTTCGCAAATCCAGGAGTTCTACCACGGGCCATCGTCGCTGTCCACAGCTCCCTACCAGCAGAACCCGTGCGCCGTGGCGTGCCACGGCGACCCCGGCAACTTCTACGGCTACGACCCTCTGCAGCGCCAGAGCCTGTTCGGTGCGCAGGATCCAGACCTGGTGCAGTACGCAGACTGCAAGCTCGCGGCAGCCAGCGGCCTGGGCGAGGAGGCCGAGGGGTCTGAGCAGAGCCCGTCGCCCACACAGCTCTTTCCCTGGATGCGCCCTCAAG
Seq A exon
TTTAATTACCCTGAAGAAACTTTTCTTCTGGGGCAGAGGCTCTGGGGGCTTTTCAAG
Seq C2 exon
CAGCCGCCGGACGCAGGCGAGGCCGCCAGACCTACAGTCGCTACCAGACCCTGGAGCTGGAGAAGGAGTTCCTATTTAATCCCTATCTGACTCGCAAGCGGAGGATCGAGGTATCGCACGCGCTGGGACTGACAGAGAGACAGGTCAAAATCTGGTTCCAGAATCGGAGAATGAAGTGGAAAAAGGAGAACAACAAAGACAAGTTTCCCAGCAGTAAATGCGAGCAGGAGGAGCTGGAGAAAGAGAAGCTGGAGCGGGCACCAGAGACCGCCGAGCAGGGCGATGCGCAGAAGGGTGACAAGAAGTAGGCTCCAGCTGGGACTGCTCGGGCCCGGACTAGCCCGCACGTCCGCCGGTCCCCCCCGCGACCACGCCGCCGCCGCCCGCCCCCCGCCTCCGAGAGCTCCGGCCCCGCGAGCGGAGCCAGGAGCTGGGCCTCCCACAGCAGCGTCCCCCGCCGCGCCAGTCCCCGCTAGTGGTAGTATCTCGTAATAGCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056648-'3-4,'3-3,4-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=55.3)
Main Inclusion Isoform:
ENSMUST00000052650fB11227
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTCTTTCCCTGGATGC
R:
CTCCGCTTGCGAGTCAGATAG
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types