HsaEX1017233 @ hg38
Exon Skipping
Gene
ENSG00000187522 | HSPA14
Description
heat shock protein family A (Hsp70) member 14 [Source:HGNC Symbol;Acc:HGNC:29526]
Coordinates
chr10:14840075-14848657:+
Coord C1 exon
chr10:14840075-14840157
Coord A exon
chr10:14843371-14843733
Coord C2 exon
chr10:14848609-14848657
Length
363 bp
Sequences
Splice sites
3' ss Seq
ATTGTTGCTTTGTTTTTCAGGGT
3' ss Score
10.46
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
ATTGTTGGATTGGCAGCAAAACAAAGTAGAATAAGAAATATTTCAAATACAGTAATGAAAGTAAAGCAGATCCTGGGCAGAAG
Seq A exon
GGTGCTCTCAAGGGACCCCCAGCTACAGCAGCTCCCACAGCCTTTTCAGAGGTGCAGTTGCTCCCTGTCAGAGCAGCCCCATGGCCAGACTGGGTGTGTCCGGGGAGCCCAGCCCCTGCACCAGCACCAACCGCAGCACTCCTGGGGTAGCCTCCACACCGCAGACTCCAGTCTCCTCTTCGAGAGCTGGTTTTGTTTCTGGTGGGGATAGGCCCTTGACCAGTGAGCCCCCTCCAAGGTGGGCAAGGCGAAGAAGGCGGTCAGTGGCCAGGACTATCGCAGCCGAGTTGGCAGAAAACAGGCGATTGGCACGAGAACTCTCAAAGCGGGAGGAAGAAAAACTGGACAGGCTGATTGCTATTG
Seq C2 exon
CTCCAGTGATCCACAAGCTCAGAAATACATCGCGGAAAGTAAATGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(35.5=100)
A:
PF0001215=HSP70=PD(39.0=64.8)
C2:
PF0001215=HSP70=FE(13.1=100)
Main Inclusion Isoform:
ENST00000378372fB17280
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains