HsaEX1018457 @ hg38
Exon Skipping
Gene
ENSG00000162687 | KCNT2
Description
potassium sodium-activated channel subfamily T member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr1:196492262-196608411:-
Coord C1 exon
chr1:196608215-196608411
Coord A exon
chr1:196567586-196567702
Coord C2 exon
chr1:196492262-196492341
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTATCTCTTTCTCCACAGAAC
3' ss Score
12.19
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
ACAGCGTCTTGTTAGTCCTCTCCCTGTACTCCGCAATATTTTCTTTCTTTCTCCCTCCTCTCCTCCATTTGTTGTTTGATGTTTCCCACTCTTTGAGGAAGGATGGTTGATTTGGAGAGCGAAGTGCCCCCTCTGCCTCCCAGGTACAGGTTTCGAGATTTGCTGCTAGGGGACCAAGGATGGCAAAACGACGACAG
Seq A exon
AACATCTAACTTTTCACTTCAGGGATGTGACAGAAGCCATCACACAGAAGAACTCCCTTAAGTTCTTGTAACAACATCTAAATGAACATAGTCCCATGTGAATTGCTCATGACAAAA
Seq C2 exon
GGTACAAGTTGAATTCTATATGAATGAAAATACATTTAAAGAAAGACTAAAATTATTTTTCATAAAAAACCAGAGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687-'0-4,'0-3,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000367433fB18041
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains