HsaEX1018460 @ hg38
Exon Skipping
Gene
ENSG00000162687 | KCNT2
Description
potassium sodium-activated channel subfamily T member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr1:196228139-196236070:-
Coord C1 exon
chr1:196235986-196236070
Coord A exon
chr1:196228532-196228722
Coord C2 exon
chr1:196228139-196228335
Length
191 bp
Sequences
Splice sites
3' ss Seq
AATGTAGGTCTCCTTCATAGAAA
3' ss Score
4.34
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATGAAATGAATGATCATCAAAGTACCCTCTCCTACATCCTGATTAACCCATCTCCAGATACCAGAATAGAGCTGAATGATGTTGT
Seq A exon
AAAAATGGCCAAAGTAAGGGATAATAAGTCAACAGCATACTTAATCATAAAACTTTGATGAGACGAAGGTGCTGAAATTGATTATAATTGAAAAATAATGGTGACTGACAGTCAACATGCACAGGGAAAAAGATGAAGAAGAAAAATAATAGTGCTTGATTCATCAGCATTCATCATCATAATCTTCTCAG
Seq C2 exon
ATACTTAATTCGACCAGATCCACTGGCCTACCTTCCAAACAGTGAGCCCAGTCGAAGAAACAGCATCTGCAATGTCACTGGTCAAGATTCTCGGGAGGAAACTCAACTTTGATAAAAATAAAATGAGAAACTTTTTTCCTACAAAGACCTTGCTTGAAACCACAAAAGTTTTGCTGGCACGAAAGAAACTAGATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.105 C2=0.730
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000294725fB18044
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCCTCTCCTACATCCTGA
R:
TCGTGCCAGCAAAACTTTTGTG
Band lengths:
247-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains