HsaEX1018465 @ hg38
Exon Skipping
Gene
ENSG00000162687 | KCNT2
Description
potassium sodium-activated channel subfamily T member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr1:196398563-196423113:-
Coord C1 exon
chr1:196423050-196423113
Coord A exon
chr1:196408195-196408364
Coord C2 exon
chr1:196398563-196398671
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTATTTTTTTTAGTGG
3' ss Score
8.32
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GATGGATGACGCTGAGGCCTGTTTTATTCTCAGTAGCCGTTGTGAAGTGGATAGGACATCATCT
Seq A exon
TGGGAAAGATTTTGGCCAGTAAATATGATAAATATCTACCAAAGATGGCAAAATTGATCATGAAAGAAAATAATAGGATGTGATCTTATGCAGGAGTGGAAGGTTTTTCTTGGATAAGGGTGTAAAACTTTCGTCCATTTTAACAAAAGGGAAAACAGTATATATAGAAG
Seq C2 exon
GATCACCAAACAATTTTGAGAGCATGGGCTGTGAAAGATTTTGCTCCAAATTGTCCTTTGTATGTCCAGATATTAAAGCCTGAAAATAAATTTCACATCAAATTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687_MULTIEX5-6/7=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0349313=BK_channel_a=PU(15.6=27.0)
Main Inclusion Isoform:
ENST00000294725fB18049
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACGCTGAGGCCTGTTTT
R:
ATTTTCAGGCTTTAATATCTGGACAT
Band lengths:
147-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains