HsaEX1018478 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128886464-128886966:-
Coord C1 exon
chr7:128886876-128886966
Coord A exon
chr7:128886655-128886737
Coord C2 exon
chr7:128886464-128886557
Length
83 bp
Sequences
Splice sites
3' ss Seq
AGGAGGTGTGTCCCCCACAGGCT
3' ss Score
6.47
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAAGGTTCCATGCGCTGCCAGAAGAAGCCATGTCCCCCAGCTCTCTGCCCCCACCCCTCTCCAGGCCCCTGCTTCTGCCCTGTTTGCCACA
Seq A exon
GCTGTCTCTCTCAGGGCCGGGAGCACCAGGATGGGGAGGAGTTTGAGGGACCAGCAGGCAGCTGTGAGTGGTGTCGCTGTCAG
Seq C2 exon
GCTGGCCAGGTCAGCTGTGTGCGGCTGCAGTGCCCACCCCTTCCCTGCAAGCTCCAGGTCACCGAGCGGGGGAGCTGCTGCCCTCGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-'37-40,'37-38,39-40
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(49.1=90.3)
A:
PF0009313=VWC=PU(45.6=92.9)
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTTCCATGCGCTGCC
R:
CCGCTCGGTGACCTGGAG
Band lengths:
160-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains