MmuEX6003380 @ mm9
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29441665-29442145:-
Coord C1 exon
chr6:29442055-29442145
Coord A exon
chr6:29441845-29441927
Coord C2 exon
chr6:29441665-29441758
Length
83 bp
Sequences
Splice sites
3' ss Seq
AGGAAGTGTATCTCCCGTAGGCT
3' ss Score
4.78
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCCTGCGCTCACCCGTCTCCAGGCCCCTGCTTCTGCCCTGTTTGTCGCA
Seq A exon
GCTGCCTCTCTCAGGGCCGGGAGCACCAAGATGGGGAGGAGTTTGAGGGACCCGAGGGCAGCTGTGAGCGCTGCCGCTGTCTG
Seq C2 exon
GCCGGCCAGGTCAGCTGCACGAGGCTTCAGTGCCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCTCGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(49.1=90.3)
A:
PF0009313=VWC=PU(45.6=92.9)
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTTCTATGCGCTGCCAA
R:
AGGTCCCTGGTTCTGTGACC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: