HsaEX1022766 @ hg38
Exon Skipping
Gene
ENSG00000034152 | MAP2K3
Description
mitogen-activated protein kinase kinase 3 [Source:HGNC Symbol;Acc:HGNC:6843]
Coordinates
chr17:21284672-21298479:+
Coord C1 exon
chr17:21284672-21284969
Coord A exon
chr17:21291437-21291781
Coord C2 exon
chr17:21298413-21298479
Length
345 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTCCGTTCTGCAGGAG
3' ss Score
9.59
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
AGTCAGCGCAGTTCGGCCGGGGTCTCCCCGGCGCTGCCCAGTCTGTCTCCGGCGCCGCCCGTCGCGGACTCGTCCTTGCTGCAGTCGCCGCCGCAGTCCTCGCCGCAGTCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTCCTCCGCCTGGCCTGGGCCGTCTGCCCGCAGCCATGAGCGTGCTCGGCCCCGGTGGAGCCCGCAGTCCTCTAGATTAGTCTCCACCGCCGTCCAGGACCCACTTGCAGCATGGAGTCGCCCGCCTCGAGCCAGCCCGCCAGCATGCCCCAGTCCAAAG
Seq A exon
GAGCAGCAGCACTGGCCTGTCGACAGTGCAGGTGGCTGGCAATGGCCTTGCTGACCTCGAGCCGGGCCCACGTGGGGACCTTTGGAGCACAGCCTACGATCCTGGTGCAAGGAATGTCCCATTCTTCTGATGCTCTGGGAGGGCTGAGCATCACTTGTGGGTCCCCCTGCCCTGTCATGGCCTCTTAAAGCCTGAGCATGGGGCCTGCCCCACAGTGTGGGAGCCTGGGGCCAGAGTCCCACCGATCTGACCCCTTTTGTGCTGGGGATTTTGTGTGCATGGACTTGTTTGGTCTTCACGGCTACCCAGCAACCTGGGTGTGTTGTCATCAACCCCATCTTAGGA
Seq C2 exon
GAAAATCCAAGAGGAAGAAGGATCTACGGATATCCTGCATGTCCAAGCCACCCGCACCCAACCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000034152_MULTIEX2-2/4=C1-C2
Average complexity
ME(1-2[93=100];2-3[99=100];2-4[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000342679fB19393
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCGGCCGGGGTCTC
R:
GGTGGCTTGGACATGCAGG
Band lengths:
342-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains