HsaEX1022807 @ hg38
Exon Skipping
Gene
ENSG00000238133 | MAP3K20-AS1
Description
MAP3K20 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27935]
Coordinates
chr2:173207547-173212791:-
Coord C1 exon
chr2:173212669-173212791
Coord A exon
chr2:173209647-173209945
Coord C2 exon
chr2:173207547-173207658
Length
299 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCTTTTTCCCTAAGCTA
3' ss Score
7.22
5' ss Seq
ATAGTAATA
5' ss Score
-3.61
Exon sequences
Seq C1 exon
GATCTCACTCTGTAGCCCAGGCTGGAGTGTCGTGGCCAGATCTCGGCTCAATGCAGCTTTGACCTCCCCAGCTCAAGTGATCCTCCCACCTCAGCCTCCCGAGTTGAGTAACTGGGACCACAG
Seq A exon
CTATGGTCAGAAATCAGGACTGTCATTCAGATCTCTGGTTCACTTCTTCATTGAGACGAGTGATGGTCTTTGAAAGCCAGACGCTGTGGCCTGCTGTCGGGGCTACCCACCTCCACTCCGCCTTGTTGTGTAGGAATGAGTTACACTTGTCAGGAAGGCTCGTGTCATTTGACATGGACTCCAGGATTGAAATGATTTGCTTGAATGATGGCCGTTTCTGAAGAAGAGAAAATAAGTAATCATTCGCTGGGACTTAAGAAAGGAGATATTTAAGAGAAAACGTAGATACTACAAGCATA
Seq C2 exon
GTAAGGACCACAAGTCTCAGAAGAGTAGGAAGTGCCCAGCATCACACAGGAAGCAAGTTACAGAACCAAGGGCTCTGTTCATAAACTGTTCAACATCTTTTATCACATAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000238133_MULTIEX1-6/6=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCACTCTGTAGCCCAGGC
R:
AGATGTTGAACAGTTTATGAACAGAG
Band lengths:
220-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains