HsaINT1022510 @ hg38
Intron Retention
Gene
ENSG00000238133 | MAP3K20-AS1
Description
MAP3K20 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27935]
Coordinates
chr2:173209647-173212791:-
Coord C1 exon
chr2:173212669-173212791
Coord A exon
chr2:173209946-173212668
Coord C2 exon
chr2:173209647-173209945
Length
2723 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
ACCTTTTCTTTTTCCCTAAGCTA
3' ss Score
7.22
Exon sequences
Seq C1 exon
GATCTCACTCTGTAGCCCAGGCTGGAGTGTCGTGGCCAGATCTCGGCTCAATGCAGCTTTGACCTCCCCAGCTCAAGTGATCCTCCCACCTCAGCCTCCCGAGTTGAGTAACTGGGACCACAG
Seq A exon
GTTAGAGTCACAATGCCCAGCTAATTTTTAAATTGTGAGTAGAGATGAGGTCTACGTTGCTCAGGCTAGTCTTGAACTTCTGGGCTCAAGCAGTCTTTCACTTCGGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCTACCACGCCTGGCCTTGTTGACATACTTTAAAAGACTCCCTATCTTGGTATTAAAATCTTACTAATCCCTTCGGTAATAGATCAAATAGCATTTTCTCCAAAATCCTTTTACTATGTCCTTGGACTAGATCAGATTTCATGGCCATATGCTCTCAGACATCTAGTATATTTCTCTGTCATAATACTTGTCAAAATAGAAATGCGATAGTTTTGAATATATTTAATAGTTTAACATTGGACACTCGGGCTGGAGAGCTCCACATGCCCTGGGACTCTTGTGCTCATCGCTACAGCCCAGTACCCGAATGGCAACAGTCGTTCTCACACCAGCAGAAGTTCAATGAATGGATAATGAATGAATGAACATAAGAAGTACTTTTGTCATGGCAAACATACATATTTATATTCTCTTGTATAATATCACAATCTCTTTTTATATTATTACCACCATGGTAATTTTCTCTCTTGCTTCCCCAAATATTTACGGAGCAAATGCTGTGTTCAAGGCACATTTTGATGCTGTGAGTGATGAACAAACGTGATTGTCTGCCTCTCTTATATTTCAGCCCGTGAGACACACATTAAACAACTAACTGCCGAATTACTTCTTTTTTTTTGAGACGGAGTCTTGCTGTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGTATGGTCTCGATCTCCTGACGTTGATCCACCTGACTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCCCGAATTACTTCTTAATTCCAATAGCAGCAAAGCCTATGAAGGAGATGCTCTCAGAGCACATAAAGTGGAACCTGATCTGGCCTGGGGTCAGGAAGTGTTTCCCTGCAGACGTGTTATTCAACTGCCATGTGAATGATGAACAGGAGTTAAGGTGGGGTGTGACGGCAGGCGTGGTACACAGCTGAAATGGGATAAGCTTCAAAGAGAGGAAACTGCTTGTAAAGATCCTGAAAAGGGGAGAAATACGCATCTGTTGAGGGACTGAAAGCCAGAAATTAAGGGGAGAATGATCTTCTTAAGCTGACACTGGTGAGGCCACAGTAATGAGGGTCTGGTGAGTCTTCTTAAGTATTCTGGTCCTTTTCATTTCTTGAGAATGATTCTTGCTCTGTCACCAGGCTGGGCTTGAACTCCTGGGCTCAAGTAATCCACCAGCCTTGGCCTCCTGAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCAAGTATTCTGGTCTTTGTCTTAAGAGTAATGGGAACTCATATATGGATTTTAAAGGAGAATGATCTGATGACATGTATACTGATCTCTTACTGCAAAAAACAAATATTACTTAAATGTTCTGTTTTGTTAATTATCTCAGCCCAGAAAAAAGTCCCTTATACCTAGACTTGAGCTCACTGTATAATTTTTGTATCCCTAAATAAAAATTCATTTACCTCACTAGCCCTAGATAAGATATTTCAAAGGAATAAAAATAAATAAGGTTATTGTAAAACAACAAACAGAAAGCCCAAAGAAGTATCTAGTAACAGGAGTAAACAACGCAGTAATTTTCAAAGTGCATGCAGTATTCATTTGGCATCAGCAGATGGCGTAAGGCGTCATGTTACTGCCCACGGCTATCGGGAGCAGAGATGAAGTTACCTAAATCTCCGCTGAGTCAGGGGGGGAATAATGTCAGCTTCCAAACATGCTATTTATAGTCATGCATCATGTGACCTGGCTCAAATGTTTCATCCTGGGTTTACTCTTCCACTCATGCAATACAATTTTCTCATTACTAAATTTATTTAACAAGCTTTAATAGGATTTATGATATCAAGTTTTCTTTTAAGAGTATTTTTGATGTCTCCCTATCCCCCTTCACTAGCAGACACAGTGCTCAGCGAATTTCAAGGTAAACAGTATTCTTGTTTCTTACACAACAGAGGACAAAGCTTCCTAACAAAGTAAACACAGAGAAATGTCTGGTAACCATCTTTTGTCTCAGAAGACAGGATTTCAATTTTTTTTTTTTTGAGATGGAGTTTTTCACTCTTGTTGCTCAGGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAAGGTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGAGCTGGGATTACAGGCGTGAGCCACCGCGACCGGCCTCAATATTCTTTTCAAATACTTACACAAGGCAACAAGCTTGGAGAAACACTATTTCTTGCTTATGAAATGCAGGACTTATAAGAGTTCCAAAATCATAAAAAAAACCTTTTCTTTTTCCCTAAG
Seq C2 exon
CTATGGTCAGAAATCAGGACTGTCATTCAGATCTCTGGTTCACTTCTTCATTGAGACGAGTGATGGTCTTTGAAAGCCAGACGCTGTGGCCTGCTGTCGGGGCTACCCACCTCCACTCCGCCTTGTTGTGTAGGAATGAGTTACACTTGTCAGGAAGGCTCGTGTCATTTGACATGGACTCCAGGATTGAAATGATTTGCTTGAATGATGGCCGTTTCTGAAGAAGAGAAAATAAGTAATCATTCGCTGGGACTTAAGAAAGGAGATATTTAAGAGAAAACGTAGATACTACAAGCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000238133:ENST00000423106:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains