HsaEX1023079 @ hg38
Exon Skipping
Gene
ENSG00000139793 | MBNL2
Description
muscleblind like splicing regulator 2 [Source:HGNC Symbol;Acc:HGNC:16746]
Coordinates
chr13:97141358-97276409:+
Coord C1 exon
chr13:97141358-97141907
Coord A exon
chr13:97222374-97222531
Coord C2 exon
chr13:97275632-97276409
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGAAGGTAAAATTTTCCAGATA
3' ss Score
1.68
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGCCAACTGTGCCAGCTCTTTTGAGGAAATAGTATTTATTGAGAGGAGATAATACATGTTTGAATTTTTCCAATTGTTCTTTATGCTGAATATTCTTCATTTAAAAGTAGCTCACATATTTTTTCTGCAGTCTTTAATTGCAGATGAGTTAGGTCTACAACTTCTTTGGTGCCTCTGTGCACACTACAGTTTGCACACACACACCCTGTCACTACTCTCTTTTATTCTATAGGATCGTTTTATGGAGTTCAAAGTCCTCAAAGCTTGCAGGGAAGGGAGGAGGGCTAGGGAAAAGGACGATTGTGCTAAGCCTGAGTGTAAACTCCCCTGGAGCAGAGAATGACTCACATTCTCTGTGACATGAGTCACTCCCATGCAAAACTGGAGTTGCGAGCTACTACTTTGCCTGTAGCTGTTTGTTTGTTCAGAGGCAGATGGAAGGCAGAGGCTGCGCAGAGAATGGAGAGCTGTGTCTGAGGAGCCTTGGAACATTCACCCAG
Seq A exon
ATACGGCAGACGGCTTTCAGAGTACAATAAACAGGGAATGAGAACTATTTACATGGAAGTTTCTTTCTCATGATGCGGTGGAGAAGCCTCGGCCACTTGGTTCTGCCAGATGTTCCTGGGGTTACTGTAAATGGGAAGGACAGGCAGAGCTAAACAAG
Seq C2 exon
GTTTATCATTTAAAAGTGCCTGTGTGAAGTCACTTTTGCTGGAAAACTGCAGCTTGGGAGCTTTCTTTGTATTCACATCCCACTCTTCTGTCAAGTACACTTTACCCTGACCTTATGAGTGGATGAAGATACCTCAGTTGTCTGACTTTGCCAATTGCTTAATTTCAGAATTTAAAAAGGGGAAAGAAAAACATCCTGCTAAAATATGAACATCTGAGTGTCTTATTTTCCAACATCGTCAATAGCTGTGAGCGTCAGCATTAAATATTCTCCCAAGGAGTGCCATGATATTGAAGTCACTTTATTAATAACAGCTGTATCTGCAAAACAGTCAAGAGACTCGGACGTTGAAAGCCAGAGATGACACTGAGCATGCTTTTATTGCGGCCTACCATCTTTAAGTGGGACATATTGATTGATGAGTGATTGCCTGTCCATACACTCTCTCATCATCCTGTTCCTTGGATTGGACTTCACTAAGCAATTTATCACTCACCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139793_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.152
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0064219=zf-CCCH=WD(100=43.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGAGTGTAAACTCCCCT
R:
TCCCAAGCTGCAGTTTTCCAG
Band lengths:
251-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains