HsaINT1018586 @ hg38
Intron Retention
Gene
ENSG00000233124 | LINC00456
Description
long intergenic non-protein coding RNA 456 [Source:HGNC Symbol;Acc:HGNC:42804]
Coordinates
chr13:97172469-97179622:-
Coord C1 exon
chr13:97179327-97179622
Coord A exon
chr13:97172865-97179326
Coord C2 exon
chr13:97172469-97172864
Length
6462 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CACTCTTCTGTGCAAAATAGGAA
3' ss Score
6.84
Exon sequences
Seq C1 exon
ACATGTCAGCAGGTCAGGAAGCAAGCAAGCCTGGAATTTAAGTCCAGGGAAGCAGGGAGAAAGCACTTTGCTAAGGAATCAGCCCAGAAGACAGTCCAGACAGGAACCTAGGTTAAGGAAGTGCAATGGGAAGACCACCCCCGACTCTGATGCCACCCAGGAAATGAGTTTGCTGTGGCCTAACAGTTGTTTTCTGAGTATATTTTCATGTCAAATAGCAAAAGTAGAACTTTTGGAGGAGGTGTGAAGAAATGAAGAGTGACTAGAGGAAAATAGAGAGTCAGAAGTTGCAGTAG
Seq A exon
GTAAGTCAAAAGAGAAGATGATTTAACATGGTCAAATAAGAGAAGAGAATTCATGGTATTGAACAACAAAAAAGTCAGTAATAATGGCAGGTGAATAACTAAGTGGCCAGTGAGAAGTAGAGGCAGTGAGTAGTGAACACTAATGAAGCTGGCTTGTAAAGAGAAGTGGTGCATTACGTTAAGGGAGGCGTTGCTTGTTTTGAAATGGGAGAGACTGATCCATGTTGATATGTCTGTGAATTACTCCTTGTTCTTCCTTATTGTGGAAATGATCAGGTCTTTGATTATTTGTTTTCACCAAAGTGATTCAAGTGGTTCAAAGACTACTAAGAATATGTATAATTCCCAGCTTCAACTATTTATCTCAAATTAAACATTTAAAGCTATTTTGATATATACCATTGTATTTCTTTTTTGTTTTTGTGTTTTTGAGACAAGGTCTTTCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTAATCATGGCTCACTGCAGCCTCGACCTCCTGGGCTCAAGCAATCCTTCCACCTCAGCCTCCCCAGTCGCTGGGACTATGGGCATACACCACCATACCTGGCTAATTTTTGTAATTTTATGTAGAGACAGGGTCTCACCATGATGCCCAGACTGGTCTTGAACTCCTGGGCTCAAGTGATCTGCCTGCCTTGGCCTCCCAAAGTACTGGGACTATAGGTGTGAGCTATTGTGCCTGGCTTACTATTGTATTTCTAAGCAGTGTTTATTTTAGACATTTCTATTGATTCTCTCTGCTATGAAAGATGAGGTTGAAGCACCCTTGGAGAAATCACATGGGCCCACACACGTTTCTCCTCTATTTTCCCAAAATGGTTGTATAACAATTTTTTACTTAAATATTCAGTCTTTACTATGTAATTATTATTCATGTTGAGCCACAAAGTACACTATTACTGCTTTTTCCATTTTGTACAGCTTATTTGTTTTTTCATTAAATTTCCCTGTGCTGATCATTAATTATTCCACATACTGTCTCATAGAACTGTATATTCGTCTCAGATAGTTAAACACATAAATAAATCAGTTCCATTTTCATAGTCATGGCTACCATTTAAACCATTCTCAGTGTCATCCTCCATCTAGCCTCTTGTTCAAATCTACCCTAGTTGGTCCCTCCTCATGCCAAAGTGCTATGTTCCTCGCATTTTCTTTGCCAGAATCCTGTGGATTTACTTCCATTGACTTTTTCTGTGTAGTATCCACTGTTTCCAAGACTCAATGTCTTTTTATTTGTTGATTTATTCTGACATTTTGGTAGTGCAACATCTCCAGGAGCTTTTCCAAGAACACATACATAGGAGGTAAATTTTTGAAATCTCAAATGTCTGGCAATGGATGCAACTTACGCTTATACTTAATTGATGGTTTGTCTTAGAGAATTCTAGGTGGAAAATCATTTTCTACCACAATTTGAAGATACTGTTTCATTTTCTTCTAGCCCTCAATACTGTAATTGAGAATTCTGATGTTATTCTAATTCTTGACCCTTTATATGTTAACACATTTTATGTCTCTGGAAATTTTTGAGATTATATTTTTACTTAGCATTCTGAAGTTTAATTGTGATGTGTCTTGTTTACATTTTCAGTCTTTGTATCTAACAGGCATTTTCTAAAAACACATATCTTCTCATTTTGGAAAAATATTCATATTATTTGTTTGATGATTTTCTTCTCCAACTTTTCTCTATTTCTTCATTCTGGATCATTGGACCTAATGCATTGGTCTCCTGTTTTTATATTATTCTTTTCCATTTGCCTTTTCTTTTTTGTCTTTTTGTTGTACTTTACCCTGGACTTTATCTTCTGAAACTCCTACAGAGTTATTGATTTGTGTTACCATAATTTTTAAGTTTCAAAAGCTTCTAATTCCTCATCAAGAGTTCTATTTTTATGGCATCATATTGTTCTTTCATGGCTGCAAAAGCTTCTCTTATTTCTCTTTTTTCTTTGGAGACAGAGTCTCTCATTCTGTCAGCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCATTGAAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACATGCCACCATGCCTGGCTAATTTTTTGGATTTTTAGTAGAGATGAGGTTTCTCCATGTTTCCCAGGCTGGTCTCAAACTTCTGAGCTCAGGAAATCCACCTGACTCAGCCTCCCAAAGTGCTAGGATTACAGGTATGAGCCATCACACCTGGCCAAAGTGTCTCTTATTTCTATGGCAAAGATAACTATACATTTTTTGTACCTTGCTTCGTATCCATTTCTCACCATTTGTTTATTCTCTATATTTTTTTTCTGCCCTTCAAGAGAGAGAATTTTCTCTATTGTCTGTGGACCCTTGACTATTGGTTTATATTTAATAGTGAGAGACTAAAAACGTTGTTTGGTGAGATGTCCAATTGCAGTAGTGGCAAAGTAGGTCGATGTAGGGGAATTCTCCTACAAAGTATAATTGAAAAAATATAATATACCTTGAAAGTCTGCTGGGAGGTAGGAAAAGGCTATTAAGGTATTCAGGACTTGAAGGACTGAAATTTCTAACTGAAGAGAAACATTTTGAAGTGAGACTTGCATTCTTTAGAACTTTTCCCCTCAAAGTATCTACAAATTCTTATGCAGGCTAAGCTGTACTCATTAATGATGCTGTTTACCCTCTTGCAATACATTCGTGGAAGTCCAGGTGAGTATTGCATCCTCTGAACCCTCTAGAGGAGTATAATGCTCCGGAGAGGCTTTGAGGTTCACATGGGCAGGGCTGCACTGCTCCATCTTTTATGCCTCCCTCTACCATCTACTGTGGAAATTAAGGCCTTTCCACTTTACTGTGGACCAAGCATATTCAGGCTTCTATTAGCAGTGAGTTTGCCCCAACCCCTGGGACCTTGGCCAGGGTATTTAATTCTGTGTTCCAAAAAAGTGCCCCCAAGTTAATGTATTTTTGCTTTGTATTCTGCAGCTTTATATTCTGACCTCCTTGATCAATCACCCTCAAAATATAATGCCAGGGGTACTATACAGACTTAATATATCCCTGCTAATTCTTTCAGTTTCTTTGATGAGCATTCTTTCTTCTCTTGTCAGACCCAGCATGTCCCTGGCCAGGATATGCTGAGATTTAACTCGAGCTATTTGCCTGGCAGAAAAGAGAGGAGGGAAGCATGTGTTTACTTTTAGAGGAGAAGCTTCTACAGATTCTTCCAGCATGGCAGAGTAATAGCTTTTGCTAGGGATGGGACGGCTGGCCACCTCAGGGGTTTCTGAGTATTCAGTGTGTGCAGAGCCAAAATCCTGGGGGGCATCCATCCAGATATACCCATCTCATGTTTCAGGGTTTCAGATTTTCCTAACCAGGACCCTGATCTTAGCACAACAAGCCTGCTTTGGCTATGCATTAAAACATCACTGGAGGTCTGCAACTCTATCAGGTCCTGAGTGCCCCTTAGCTGTGTCCACTTTTCAACTGCAGCAAAATAAGTACCTCTTTTTTAAGCTACCAGAGAGTCCCTCTGGCTCTCACACTTATTGCCCTCAGCTTCTCATCACCCTTTTGCAGGGTGGCAATACAAGTTTGTAATTACCATCCAACTCTGCTCTTGTTGGGGGCATTGTTCTCCACTTAGCTTTTAAATACCTGATTATCTGGAATCATCACACTAGCAAAGGATATTAACTTCTACTGGGACATTTTTCCAGGTCAACACCAGTGACATCTTCAGCAATTTGGCCACCATCTCATTCCAGGGGCAATCTGTTCTCCATGTTTACTCAGGATGGGGTCCTCTTTGCAATCCAGGTGGTGTGTGGGTCAGTCCCCAGGCCCATCTTTGCACCCGTTTTCCTGGATCACTGTTAGGATCACTTGGTCAGTTCAAATCCTCTGAGAAGAAGACTTCAAGTCAGGATTCGTTGTATAAGAGATTTGCTGGGGGAGACACCTATGAAGGATAAACGGGGAAGAAGTAGGAGTGGGTAGGAAGAGCCTTCAGGCAGCAGTGCAGGTCTGGCACCTGTGAGAGGAGAGAAGGAAGGAAGGATTGGGTAGGAAGAGCCCACGATTGCAGTGTAGTTTTTAGAGTGGCTTGGCCAGGCTGTTGGGAAGTCCCTGAGACTTCCCAAAGGTTGCCTGTTGGAAGAGTCTTCCACAACTGTAATGTTCAGTCATTGGCTGAATGTAGCCCAGGGACACATGGCCTCAATGCTCCTATGCTCTCTGCAGGGTATTTTCTTAAAGGAAACCTGAGGCACACCTCCACAGCTGCCACAGGTAATTATTTTCTCAACATGAGAATTCTATAGTCTCCTTCCCAGGGATCCAAGTCTGGTTCCCAGTAATCTGTGAGCTGAAGTGGGAGAAAGGACTGAAGATGCCATCATCAGTTTGTGGACTGTCATTGAGTCTTTTTTTTTTCCAGGGTAGTGACTCACCACCTGTTTCCACTGGCCTTAGTATTCCAGAGTCTAGAGAGTCTCTGCTTTCATTTTTCCAGAAAAGAAACCTTCTGATGCTGAGATAAGGGAGATCATTAATTGGCATTGAAGTGTGCAGATGTGATCTAGGAGTCTGCTTCTTCTACAGCCAATCCTGTTTTCAGCCATGCTCTGTGAGCCTGCCTTCCAAAATACCTATTTGCCTTTGATCCCTCAGTTTGTCTTGGGGTTTGCAGCACATATTGATTTGCTTTTTGTTAGCATCTCCCTATGAAGACATGTAGCTTTCAGCTCTTTTCCCTCTGCTAAGTCAATCACCACTTATCCATCCTCTTTTTATCTTCCAAACTTGGTTGACATTATTCATTCATTGTAGACCTTGTTTCTGGTTTTCTTTGTCCTAATGAGTCTGTATAATTTTTATTCCTTTGTTCTTATTGGTTTGGAGGAGCGAGTAGAGGTAAGGAATAGATGCAACTGTAGTCAAGAGAAGGGTCAACTTTTCTGTGTAACCAGAAGACAGACAGAAGAAATCAGGTACTGAAAAGTATGGCTGTAGAGTTAGGAAGTTAAAGCCATTCCCTCCTGAATGCCCTGTCTTATCTCATGCCCAGCTGCCCACCCACCAGCTTCATTCCAGAAGCAGCTTACATTAATAATGGCATTTTTCACCCTGCCTAAGAGAAATCTCATTTTTCTTTGTGTTTACCTTAGAATAGAGAAAAGCAACTTCTAGAAGTTTACTTTACTGCAGATGCTTTGTACAAAGCTTTATAGGTACAAAAATGGGCAGTATCTGGCTCTTGCCTTTAAAGAACTTATAAACTAGTGAGACAGATGATATAAAATGACAATTTTAGCAGAATGTGATAAATTTTTACGGCACATGAATTTAGGGAGTTCCATGGAAATGCAGAAGAGGGCCCTAACATCAACCCGGAACTTAAGCAAGATTCCTAAAGGAATGGAGGTATCCGATAAGTACTGAAAGATGATTCCACATTAGCCAGGCAAAGATAGAAGGCGCAGATATTCCAGAGACAGGTGATGGGTTAGCTAGCATGTGGTGGTGAGACATATCCTGCTGTTTGTGGGGGAACAAAGAGGCAAGAGGAGGAAGTGGTAGGTTTAGAGTGGACTTAAAGGAGGCTGGAAAAGGGAAATGGCTGGATCACGGGCTTCTTTGGTTCCACTTAAAGAGGAGGAGTGACATGTCTGATTTGGGTCTTAGAAACATCACTCAGGCTATAAAGACTAAGGAGAGGCCAGGGCAGGCAGGCAAGTGGAAATGATGGCCTGAACCATGTTGGTGATGCCAAAAACTGGGACAAATGAAAGGCAGTCATTGGAGCCAAGACACTAGGCTGGACCTCACTCCTCTGCCAATCATTTGTGCACTAAGTCCTTCAGCCTCCTTCCTGCATAGTGGGAACCACAATCTCTGCCTTTTGGTTAGTTCTTTGTATTAGAGAAGACAGTGACCTAGTCCATATTTGCCTGACATAGCACTTGGCACATAAGCAGTTGTTTTTATCCCTTTCCTCATTCCACATTTCTAAGTAACTTCCAATTCCTCTCAGTGTCTTACCTTTGATTCATAGTTGTTTTAAGAAAATTGGAATGACAAGGAAACAGTCTTAGTGGATCCTTTTGCTTTAGACTAGCCTGGACCAAAGCCCATCCATTCATCGTTATATTATTTTTATAGATGCTTGTATACATACACACACATATACATACAACACATCCCTTTTCTTCCTCACTTTTCTTCCATACTCATTTCCCACTGCTCCTTTCCTCCATTTGATGGACGAAGAACCCCAGTGAGTTTTGATGATACCCAGAAATTTTAAGATGTATCAAAGATGTCATGGTCATGCAACTTGTGTAATTACATATATATCTATATATTTTTTTTCGAGCCTCCACTCTGTGCTAAACACTCTTCTGTGCAAAATAG
Seq C2 exon
GAAGCACCAAAGAAGAAAACTCTGCCTTCACTGAGCTCTGGAAGAGGTGGAAGAGATGGGAGACTTACAGTTACATGCTGACCTTTTCAGTCATTTGGAGGCCTCATGTTCTAGGCTCTTAACTGATGGTGATGAAGCCACCAACAGGTGTGAAAGGTGTCCTCTTATTTACACACTATTCCTTTGAATAGTGTGATTAAGTTTTCATTCTTACAGTTCTATGCTACGACCAATTTGATAAAAGATTCTCATTTAACCATGCTGTCTTCATATATGTAAGCTTCCTTGATATCTAAAGAGTGTGAGCTCCTGAGCCAAGTCCAGTGGAAAATTTGCAGTCTCTTCTAGGATTAGATGAAGACCCAAGAATTCATCTTGCTACAGTGCGACAAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233124:ENST00000453862:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains