HsaEX1023167 @ hg38
Exon Skipping
Gene
ENSG00000249898 | MCPH1-AS1
Description
MCPH1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51655]
Coordinates
chr8:6679705-6708200:-
Coord C1 exon
chr8:6708141-6708200
Coord A exon
chr8:6688530-6688982
Coord C2 exon
chr8:6679705-6679805
Length
453 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTTTTTTTTAAGATG
3' ss Score
8.9
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AGCTGGGCCGGCTGCGGACGCGGGAAGGGAGGTGGTGGCGACTGACGGAACTGGGTGAAG
Seq A exon
ATGGAGTCTCTGTCACCCAGGCTGGAGTGCAATGGCGCAATCTCGGCTCCCTGCAACTTCTGCCTCCCGGATTCAAGCAATTCTCCCGCCTCAGCCTCGCAAGTAGCTGGGATTACAGGCACACACCACCATGCCTGGCTAGTTTTTGTATTTTTGTAGAGACAGGGTTTCGCTGTGTTGGCCAGGCTGGTCTTGAACTCTTGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTCCAGGAGTGAGCCACTGCTCGTGGCCTGTATTTTTTATGGAAACAGAAAAGCCCATCCTAAAGTTTACAGAAAATCTCTCTCTCTCTCTCTGTCACTCTCTCTCTTTTTATAAGACATGGTGTCACTATGTTGCCCAGGCTGGACTTGAACTCCTTGGCTCAAATAATCATCTCACCTCAGCCTACTGAATAGCTGGGATTACAG
Seq C2 exon
CAGCCCCATTTGAAGCACTCGTTTCCTGTGGCCACGATGGTGTGTCTGCCTGCACCACCGTAAGTAACCTCTGCTCTGCAGCCTCGCCTCCTCCTGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249898-'0-6,'0-5,1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains