HsaEX1023170 @ hg38
Exon Skipping
Gene
ENSG00000249898 | MCPH1-AS1
Description
MCPH1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51655]
Coordinates
chr8:6669989-6708209:-
Coord C1 exon
chr8:6708141-6708209
Coord A exon
chr8:6674546-6675069
Coord C2 exon
chr8:6669989-6670240
Length
524 bp
Sequences
Splice sites
3' ss Seq
ATCCTCCCATTTTCCCTCAGAAG
3' ss Score
8.79
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATGCTCCCCAGCTGGGCCGGCTGCGGACGCGGGAAGGGAGGTGGTGGCGACTGACGGAACTGGGTGAAG
Seq A exon
AAGCTGTTGTGAGTTATCCTGGTTTCATTGGTACCTGCTGGCAAGCATCTCAAGTGGGCACTCCAGAAAGGAAATTGTGTACCAGTCAAGATGTAGCAAGCACTTGGGGCTGGCACATTCGTGATTTGCGATTGTGCTTTTCTTGTGCCAACCCACGTTCCCCTCTTCCAAGTAAAGACTCTGTTACAGAGATTTCCCTGGGGTGCCAGAGAGTGGTATGTGGCTGCAACACTAATCCCATGCCTTGGTTTCACTACGGACGAAGTAGGGGGCTACGGGACGCAAAATATTGTGAAGCGGAAGTCACTGACAGATGAAGAGCCTTTCCATCCTGAAAAAGAGAGTCCTCTCACTCATTCTGTCTTTTGGGAATTTATTTGGAAAGAACATAGGCTTTGGAACCAGAGAGATGGAATTTGAATCTCCCCTCTGCTACTTAGACGTGGGTGACCTTGGGCAAGTTACTTAACCCTTAATAGCAGGCATTTCTTCTTCTCTAATAGTGGTTCTGCGGATTGAATGAG
Seq C2 exon
GCAGCAGTCTGTCAACAACTATGGCATCCAGCTGGTCAGAAAGACTAGAGGATTTGACATTTTGCGGCTGTTCTCTAGAACCAAAGAAATGAGAACCTCTTGGTAAAATCCGCTGGTCCAGGAGTTATTATCTCCTGGATTATCTGCCAAAGAAATTATCTGCCAAAATTACAATGTAAAACTGAAGAAGACAACCGATAACTCAGTTAAAATTTTGGAAAAATACAAAGAAACTGTGACTGGGGAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249898_MULTIEX1-1/4=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCGGGAAGGGAGGTG
R:
TTTCTCCCCAGTCACAGTTTCT
Band lengths:
294-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains