HsaEX1023169 @ hg38
Exon Skipping
Gene
ENSG00000249898 | MCPH1-AS1
Description
MCPH1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51655]
Coordinates
chr8:6620135-6627310:-
Coord C1 exon
chr8:6627151-6627310
Coord A exon
chr8:6620992-6621635
Coord C2 exon
chr8:6620135-6620224
Length
644 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCTTTCCGCTGTAGGGC
3' ss Score
11.42
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
CTTCTGCAGATGGCCTCCCCTCTCTGCGACTGGTTCCTTATCGAGGCAATGGAGATGTGGACTGCGGTGACTGATCAAGCCTCACATATCTACTGAATCAGGAAGCCCGAAGGCCTGAGGCCTCCCGAGTGGCCCCATGGGAGCGTCGTGCATTTTTCTG
Seq A exon
GGCCCGATGACGATGCTGGCCTGGCGGGGGACTTGGCTGACCCGGCCTCCGCACAGGTGGACTAGTTCACAGAGCTTGGCCACTGGGGGGCTGCTGGCAGGCGAGACAAACATCGCTGGCTGGTCGGCAAAGAGGGTTCCGCGGTACGGCCCTGCAGACAAGTGGCACTCGCTTCGGCACAGCTGTGGGGCAGACAGAGATAGAATTACAGAGGTGGGACCACTCCAGTCTCCATAGCGTAGGCGAACTGTTGCAGTTTACTTCCTTTTTTATGAAAAGAATAGACTGAATGTAAGGCTGCCATGCTCCTGTGAATTTTGAATTCTGAGAATCCAGAGAAGATGATGACATTAATGACATAAAACTGACGTTTTCTGAAGTAGCCATGCGTAAAACTCCAAGGAAACAAATTAGAAAAAAAAAAGTGTAGGCCTTTGAATTATTCCAAAGCCTCAAACAAAATATTGAAAAGCAACTGTTAGCACAGCAGAGCCATAGCTAGGCTGAACTCTCACTAAAGTAACTTGGTGACGTGTGCAAGTGACGGCAAGATTCTAATGCACTGCAAATGCCGGCTGTGCTGGGAGAGCGTCATTCAATCCAGCGCGCTCCAGGCTGTTGGCAGAAAAGGACTTTTATAGGAT
Seq C2 exon
CATAATAAATACCGAGCCTCAGCAGCTTTCATGTGCCTTGCAGGAGACAGTGGCAGCAGGGGCAAATGATTCTTCCTGGATGGTGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249898-'30-22,'30-21,34-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCAGATGGCCTCCCC
R:
AGTCACCATCCAGGAAGAATCA
Band lengths:
248-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains