HsaINT1022675 @ hg38
Intron Retention
Gene
ENSG00000249898 | MCPH1-AS1
Description
MCPH1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51655]
Coordinates
chr8:6620135-6621635:-
Coord C1 exon
chr8:6620992-6621635
Coord A exon
chr8:6620225-6620991
Coord C2 exon
chr8:6620135-6620224
Length
767 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
CCTTGTGTTGAATTTTATAGCAT
3' ss Score
6.99
Exon sequences
Seq C1 exon
GGCCCGATGACGATGCTGGCCTGGCGGGGGACTTGGCTGACCCGGCCTCCGCACAGGTGGACTAGTTCACAGAGCTTGGCCACTGGGGGGCTGCTGGCAGGCGAGACAAACATCGCTGGCTGGTCGGCAAAGAGGGTTCCGCGGTACGGCCCTGCAGACAAGTGGCACTCGCTTCGGCACAGCTGTGGGGCAGACAGAGATAGAATTACAGAGGTGGGACCACTCCAGTCTCCATAGCGTAGGCGAACTGTTGCAGTTTACTTCCTTTTTTATGAAAAGAATAGACTGAATGTAAGGCTGCCATGCTCCTGTGAATTTTGAATTCTGAGAATCCAGAGAAGATGATGACATTAATGACATAAAACTGACGTTTTCTGAAGTAGCCATGCGTAAAACTCCAAGGAAACAAATTAGAAAAAAAAAAGTGTAGGCCTTTGAATTATTCCAAAGCCTCAAACAAAATATTGAAAAGCAACTGTTAGCACAGCAGAGCCATAGCTAGGCTGAACTCTCACTAAAGTAACTTGGTGACGTGTGCAAGTGACGGCAAGATTCTAATGCACTGCAAATGCCGGCTGTGCTGGGAGAGCGTCATTCAATCCAGCGCGCTCCAGGCTGTTGGCAGAAAAGGACTTTTATAGGAT
Seq A exon
GTAAGAAATGCTGTAAATCCAATACCATGGTCTGGACGGGGAAAGGGAGAGTGAGGCAATGCAAAAGTAGAATTCCTAGAGCCATTCCCGAAACACGCTGGGTTTGGGGGAGAGAGGTGTCTCGAGATTGTTTCAATGAGCTGTTGGGAAACATTTCAGAAGCAGGGATGTGAAGCTGCTCTGCTTCTCATTCTGGCAATGTGTGGTCATCTGTTTGACTCAGAGGACCGCGGGAAGGCCCAGTTATTCTGAACACGCATTTTCCTAACTACGGGTTGGTAAAGACTTCTTCAGTGTACACACCCTGCGAGATGCTATGGGTTATGTGCCATCCACGTTTTGTTTTGCGTATTTTCCCTGCTTATTTTTCCTACAATATCTGAAATTAATGGTTCACACAAATTAGAGATTTGAGGGGATGTATTTCGGGGAAGGGATGAAGGGACCTTCTCAGAGGAGTATAACCTGGGGTGGGGTGACGTCGGGGTCCTCTCAGTCAGGGGCAGCAGGCAAGGCTGACCTCGGAGGCAGGGGTAGGGTGCAGGTTGGGGGAAGAGCAGCAAAGAGTAAATTCCACAGCCCACATCACTCACAAAATCAGAGAAACAGTGAACTATTCTTCTGCTAGGTTTTCCTACTACTGTAATATTTAACAAAAGAGGATCCTACTGTGAAAATATAGCTCCAGCATCAATGGAGTAGATCCGATACACTTATATATGCTCATGGAATTTGCTTGTTCTCTCCCCTTGTGTTGAATTTTATAG
Seq C2 exon
CATAATAAATACCGAGCCTCAGCAGCTTTCATGTGCCTTGCAGGAGACAGTGGCAGCAGGGGCAAATGATTCTTCCTGGATGGTGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249898:ENST00000515608:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTTCTGAAGTAGCCATGCG
R:
AGAATCATTTGCCCCTGCTGC
Band lengths:
349-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains